Variant report

Variant	rs189305872
Chromosome Location	chr11:65924241-65924242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65919284..65922014-chr11:65923374..65926941,3	K562	blood:

Variant related genes	Relation type
ENSG00000238763	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
5	esv1809358	chr11:65916558-65935189	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1811442	chr11:65922589-65939026	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1804701	chr11:65922589-65957003	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv1813498	chr11:65922589-65957003	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65905200-65947000	Weak transcription	Fetal Lung	lung
2	chr11:65905400-65939600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:65905800-65952800	Weak transcription	Fetal Stomach	stomach
4	chr11:65906000-65960200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:65910000-65939600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:65910400-65927000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:65910600-65939600	Weak transcription	NHDF-Ad	bronchial
8	chr11:65911000-65924400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:65911000-65924400	Weak transcription	NHEK	skin
10	chr11:65911000-65924600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:65911000-65939400	Weak transcription	NH-A	brain
12	chr11:65911000-65943200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:65912800-65924400	Weak transcription	A549	lung
14	chr11:65913200-65927000	Weak transcription	Right Ventricle	heart
15	chr11:65913200-65927200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:65913400-65924400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr11:65913400-65924400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:65913400-65929800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr11:65913400-65951000	Weak transcription	Spleen	Spleen
20	chr11:65914000-65924400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr11:65914200-65939600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:65914600-65929600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:65914800-65927000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr11:65917800-65924400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:65918000-65949200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:65918400-65924400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:65918600-65924600	Weak transcription	Osteobl	bone
28	chr11:65918800-65926800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:65919000-65924400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:65919000-65924400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr11:65919000-65927000	Weak transcription	Right Atrium	heart
32	chr11:65919000-65927000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:65919000-65928600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:65919000-65928600	Weak transcription	Left Ventricle	heart
35	chr11:65919000-65939800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr11:65920200-65928000	Weak transcription	Primary T cells from cord blood	blood
37	chr11:65920400-65924400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:65920400-65954800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:65920800-65924400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:65921000-65924400	Weak transcription	Hela-S3	cervix
41	chr11:65921000-65932400	Weak transcription	Primary B cells from cord blood	blood
42	chr11:65922800-65926800	Weak transcription	Fetal Brain Male	brain
43	chr11:65922800-65927000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:65923400-65924400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr11:65924000-65926000	Enhancers	GM12878-XiMat	blood
46	chr11:65924200-65925800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:65924200-65926200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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