Variant report

Variant	rs1893199
Chromosome Location	chr21:39908521-39908522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2836485	0.87[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2836487	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2836488	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39896000-39910400	Weak transcription	Small Intestine	intestine
2	chr21:39904200-39910400	Weak transcription	Aorta	Aorta
3	chr21:39904400-39909000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr21:39904800-39910800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr21:39906000-39910400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr21:39908000-39908600	Enhancers	Esophagus	oesophagus
7	chr21:39908400-39908600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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