Variant report

Variant	rs1893327
Chromosome Location	chr8:102565346-102565347
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102559913..102562210-chr8:102564121..102566915,2	K562	blood:
2	chr8:102502907..102504834-chr8:102564448..102566496,2	MCF-7	breast:
3	chr8:102557958..102562210-chr8:102562559..102566915,4	K562	blood:
4	chr8:102564639..102566230-chr8:102610214..102613012,2	MCF-7	breast:
5	chr8:102550263..102552940-chr8:102564764..102566372,2	MCF-7	breast:
6	chr8:102557913..102561413-chr8:102562095..102566290,5	MCF-7	breast:
7	chr8:102505524..102507840-chr8:102565168..102568035,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083307	Chromatin interaction
ENSG00000254024	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1057477	0.92[AFR][1000 genomes]
rs16867824	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs1893328	0.92[AFR][1000 genomes]
rs73701927	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024652	chr8:101802121-102587124	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
2	nsv539699	chr8:101802121-102587124	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102551400-102577400	Weak transcription	Fetal Stomach	stomach
2	chr8:102552200-102620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:102553000-102573600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:102554200-102569000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:102554200-102570600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:102554400-102570400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:102556600-102567000	Weak transcription	HMEC	breast
8	chr8:102557200-102570600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr8:102557400-102577400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr8:102557600-102570600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr8:102558400-102568200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:102558600-102566600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:102560800-102569400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:102562800-102567400	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr8:102563600-102566600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:102564200-102565600	Strong transcription	Esophagus	oesophagus
17	chr8:102564400-102566600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:102564400-102566600	Strong transcription	Fetal Intestine Small	intestine
19	chr8:102564400-102566600	Strong transcription	NHEK	skin
20	chr8:102564400-102566800	Strong transcription	Placenta Amnion	Placenta Amnion
21	chr8:102564600-102565600	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr8:102564600-102565800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr8:102564600-102566000	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr8:102564600-102566800	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr8:102564600-102568000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr8:102564600-102569000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:102564800-102566600	Strong transcription	Placenta	Placenta
28	chr8:102564800-102570400	Weak transcription	Gastric	stomach
29	chr8:102565000-102566600	Strong transcription	Pancreas	Pancrea
30	chr8:102565200-102566200	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links