Variant report

Variant	rs189370210
Chromosome Location	chr20:13548089-13548090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:13543205..13545985-chr20:13547825..13549640,2	MCF-7	breast:
2	chr20:13545680..13548329-chr20:13550479..13553310,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061303	chr20:13395546-13810990	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv585435	chr20:13410638-13582476	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv916202	chr20:13421724-14043615	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1059817	chr20:13422602-13807968	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv458871	chr20:13447896-13573415	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv585436	chr20:13447896-13573415	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv912687	chr20:13507057-13591596	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1797514	chr20:13541011-13610424	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv912688	chr20:13546903-13589682	ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13492200-13567000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr20:13497800-13563400	Weak transcription	Pancreas	Pancrea
3	chr20:13506400-13558800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr20:13508000-13563600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr20:13508200-13556400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr20:13508400-13550400	Weak transcription	GM12878-XiMat	blood
7	chr20:13508400-13556000	Weak transcription	HSMM	muscle
8	chr20:13508400-13559600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr20:13508400-13563400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr20:13509200-13548200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr20:13509200-13556000	Weak transcription	Fetal Stomach	stomach
12	chr20:13512800-13548400	Weak transcription	Left Ventricle	heart
13	chr20:13512800-13556000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr20:13515000-13605600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr20:13526800-13561800	Weak transcription	Stomach Mucosa	stomach
16	chr20:13526800-13613800	Weak transcription	Hela-S3	cervix
17	chr20:13527000-13556000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr20:13527400-13552200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr20:13527400-13560000	Weak transcription	HSMMtube	muscle
20	chr20:13527400-13562200	Weak transcription	Aorta	Aorta
21	chr20:13527400-13563400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr20:13527600-13559600	Weak transcription	HMEC	breast
23	chr20:13527800-13563400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr20:13529200-13552200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr20:13529400-13555800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr20:13534600-13563600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr20:13534600-13563600	Weak transcription	Lung	lung
28	chr20:13534800-13552200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr20:13535000-13559600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr20:13535000-13563400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr20:13535200-13560200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr20:13535400-13556400	Weak transcription	Liver	Liver
33	chr20:13535600-13608000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr20:13535800-13552400	Weak transcription	NHDF-Ad	bronchial
35	chr20:13535800-13561400	Weak transcription	NHEK	skin
36	chr20:13536600-13551400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr20:13536600-13556000	Weak transcription	Fetal Muscle Leg	muscle
38	chr20:13536800-13563400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr20:13537400-13563600	Weak transcription	Placenta	Placenta
40	chr20:13537600-13556000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr20:13538200-13571800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr20:13538800-13556000	Weak transcription	Ovary	ovary
43	chr20:13538800-13556200	Weak transcription	Fetal Intestine Large	intestine
44	chr20:13539000-13555800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr20:13539000-13556000	Weak transcription	HepG2	liver
46	chr20:13539000-13560600	Weak transcription	Thymus	Thymus
47	chr20:13541200-13578000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr20:13541400-13557600	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr20:13541800-13558200	Weak transcription	Primary B cells from peripheral blood	blood
50	chr20:13542400-13556000	Weak transcription	Psoas Muscle	Psoas

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