Variant report
| Variant | rs1893784 |
|---|---|
| Chromosome Location | chr18:44919327-44919328 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11082575 | 0.94[CHB][hapmap];0.87[CHD][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11663526 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11665597 | 0.88[ASN][1000 genomes] |
| rs11665601 | 0.89[ASN][1000 genomes] |
| rs12327454 | 0.87[ASN][1000 genomes] |
| rs12607072 | 0.81[ASN][1000 genomes] |
| rs12960592 | 0.88[ASN][1000 genomes] |
| rs12960952 | 0.87[ASN][1000 genomes] |
| rs1434518 | 0.82[ASN][1000 genomes] |
| rs1560902 | 0.87[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs16951627 | 0.89[ASN][1000 genomes] |
| rs16951972 | 0.89[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1893787 | 0.88[ASN][1000 genomes] |
| rs34046363 | 1.00[ASN][1000 genomes] |
| rs34423240 | 0.92[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4452038 | 0.85[ASN][1000 genomes] |
| rs71352652 | 0.89[ASN][1000 genomes] |
| rs7240132 | 0.88[ASN][1000 genomes] |
| rs877630 | 0.96[ASN][1000 genomes] |
| rs919979 | 0.89[CHB][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap] |
| rs953291 | 0.89[ASN][1000 genomes] |
| rs983095 | 0.92[AFR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833641 | chr18:44815063-45020202 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv1801141 | chr18:44908270-44955409 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1893784 | HDHD2 | cis | parietal | SCAN |
| rs1893784 | RRS1 | trans | parietal | SCAN |
| rs1893784 | KIAA1632 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:44918200-44919400 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
