The 2.0 version of rSNPBase

Variant report

Variant rs189380560
Chromosome Location chr6:46109685-46109686
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:46098800-46110200 Weak transcription Primary T cells from cord blood blood
2 chr6:46098800-46110200 Weak transcription Primary hematopoietic stem cells blood
3 chr6:46098800-46110400 Weak transcription Primary B cells from cord blood blood
4 chr6:46098800-46110400 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr6:46098800-46110600 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr6:46098800-46110600 Weak transcription Adipose Nuclei Adipose
7 chr6:46098800-46110600 Weak transcription Left Ventricle heart
8 chr6:46098800-46110600 Weak transcription Dnd41 blood
9 chr6:46098800-46110800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr6:46098800-46111600 Weak transcription Right Ventricle heart
11 chr6:46098800-46112400 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr6:46098800-46112800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr6:46098800-46112800 Weak transcription Rectal Smooth Muscle rectum
14 chr6:46098800-46112800 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr6:46098800-46113000 Weak transcription Primary T regulatory cells fromperipheralblood blood
16 chr6:46098800-46117800 Weak transcription Gastric stomach
17 chr6:46098800-46129000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr6:46101400-46110600 Weak transcription Duodenum Mucosa Duodenum
19 chr6:46101600-46111800 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr6:46101600-46112000 Weak transcription Stomach Smooth Muscle stomach
21 chr6:46101800-46112000 Weak transcription Colon Smooth Muscle Colon
22 chr6:46101800-46113000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr6:46102000-46110600 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr6:46102200-46110400 Weak transcription Primary T killer naive cells fromperipheralblood blood
25 chr6:46102200-46113000 Weak transcription Fetal Intestine Large intestine
26 chr6:46105000-46114600 Weak transcription Fetal Muscle Leg muscle
27 chr6:46105400-46110600 Weak transcription Brain Anterior Caudate brain
28 chr6:46105400-46110600 Weak transcription Thymus Thymus
29 chr6:46105400-46115000 Weak transcription Aorta Aorta
30 chr6:46105400-46133800 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr6:46105600-46113200 Weak transcription Spleen Spleen
32 chr6:46105600-46128600 Weak transcription Brain Angular Gyrus brain
33 chr6:46105600-46137400 Weak transcription Brain Inferior Temporal Lobe brain
34 chr6:46105800-46112800 Weak transcription HSMMtube muscle
35 chr6:46106000-46110400 Weak transcription Fetal Heart heart
36 chr6:46106400-46110600 Weak transcription Pancreas Pancrea
37 chr6:46106400-46110600 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr6:46106400-46111000 Weak transcription Primary monocytes fromperipheralblood blood
39 chr6:46106400-46111600 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr6:46106400-46112600 Weak transcription Brain Cingulate Gyrus brain
41 chr6:46106400-46112800 Weak transcription Brain Hippocampus Middle brain
42 chr6:46106400-46125400 Weak transcription Psoas Muscle Psoas
43 chr6:46106400-46138000 Weak transcription Lung lung
44 chr6:46106600-46111200 Weak transcription Monocytes-CD14+_RO01746 blood
45 chr6:46106600-46112800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr6:46106600-46112800 Weak transcription Liver Liver
47 chr6:46107600-46111400 Strong transcription Primary T cells fromperipheralblood blood
48 chr6:46107800-46114000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
49 chr6:46108000-46110800 Weak transcription GM12878-XiMat blood
50 chr6:46108000-46130000 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015