Variant report

Variant	rs189401
Chromosome Location	chr1:91560607-91560608
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs648463	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3397009	chr1:91084471-91610356	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91558200-91565800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:91558400-91569400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:91558600-91563800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:91558600-91563800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:91558800-91563800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:91558800-91563800	Weak transcription	Hela-S3	cervix
7	chr1:91558800-91564200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:91558800-91564200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:91558800-91570000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:91559000-91564200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:91560400-91563600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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