The 2.0 version of rSNPBase

Variant report

Variant rs189425354
Chromosome Location chr5:127450710-127450711
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:127421600-127466800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
2 chr5:127423600-127494000 Weak transcription K562 blood
3 chr5:127432400-127454600 Weak transcription Fetal Kidney kidney
4 chr5:127435200-127450800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr5:127437800-127451600 Weak transcription HMEC breast
6 chr5:127441200-127536800 Weak transcription Colonic Mucosa Colon
7 chr5:127441400-127457400 Weak transcription Stomach Mucosa stomach
8 chr5:127441800-127451000 Weak transcription Colon Smooth Muscle Colon
9 chr5:127442400-127525000 Weak transcription Right Ventricle heart
10 chr5:127443000-127457200 Weak transcription Pancreas Pancrea
11 chr5:127443000-127467000 Weak transcription Esophagus oesophagus
12 chr5:127443800-127459800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr5:127444400-127457600 Weak transcription Primary neutrophils fromperipheralblood blood
14 chr5:127445200-127456600 Weak transcription Spleen Spleen
15 chr5:127445200-127466800 Weak transcription Gastric stomach
16 chr5:127445200-127480200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr5:127445400-127491800 Weak transcription Psoas Muscle Psoas
18 chr5:127445600-127451000 Weak transcription Small Intestine intestine
19 chr5:127446000-127451200 Weak transcription GM12878-XiMat blood
20 chr5:127447000-127525000 Weak transcription Fetal Brain Male brain
21 chr5:127447600-127454800 Strong transcription Rectal Mucosa Donor 31 rectum
22 chr5:127447600-127455000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
23 chr5:127447600-127455000 Strong transcription Fetal Intestine Large intestine
24 chr5:127447800-127451200 Weak transcription iPS-20b Cell Line embryonic stem cell
25 chr5:127447800-127455000 Strong transcription Rectal Mucosa Donor 29 rectum
26 chr5:127447800-127466600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr5:127448200-127451400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr5:127448400-127452000 Strong transcription Breast Myoepithelial Primary Cells Breast
29 chr5:127448400-127454000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
30 chr5:127448400-127458600 Weak transcription Muscle Satellite Cultured Cells --
31 chr5:127448600-127451800 Strong transcription Brain Anterior Caudate brain
32 chr5:127448600-127453000 Strong transcription HUVEC blood vessel
33 chr5:127448600-127453400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr5:127448600-127453600 Strong transcription Primary hematopoietic stem cells blood
35 chr5:127448600-127454600 Strong transcription A549 lung
36 chr5:127448800-127451000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
37 chr5:127448800-127453600 Weak transcription H1 Cell Line embryonic stem cell
38 chr5:127448800-127454000 Strong transcription Primary B cells from cord blood blood
39 chr5:127448800-127455000 Strong transcription Duodenum Smooth Muscle Duodenum
40 chr5:127449000-127452000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr5:127449000-127452800 Strong transcription Primary T cells fromperipheralblood blood
42 chr5:127449000-127453400 Strong transcription Dnd41 blood
43 chr5:127449000-127455000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr5:127449000-127455000 Strong transcription Duodenum Mucosa Duodenum
45 chr5:127449000-127457400 Weak transcription Placenta Placenta
46 chr5:127449200-127451000 Weak transcription iPS-18 Cell Line embryonic stem cell
47 chr5:127449200-127452000 Strong transcription NHEK skin
48 chr5:127449200-127454000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
49 chr5:127449200-127454000 Weak transcription Brain Germinal Matrix brain
50 chr5:127449200-127454800 Strong transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015