Variant report

Variant	rs189433825
Chromosome Location	chr16:59389782-59389783
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv906745	chr16:59323025-59408342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv906746	chr16:59323025-59423982	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv906747	chr16:59385832-60172030	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59389000-59391200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr16:59389000-59391200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr16:59389200-59389800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr16:59389200-59390400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr16:59389200-59391000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr16:59389200-59391200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr16:59389400-59390000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr16:59389400-59390000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr16:59389400-59390800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr16:59389400-59391000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr16:59389400-59391000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr16:59389400-59391400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr16:59389600-59389800	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr16:59389600-59392000	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links