Variant report

Variant	rs189436579
Chromosome Location	chr17:67150496-67150497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr17:67150370-67150720	HepG2	liver:	n/a	n/a
2	CEBPB	chr17:67150367-67150804	HepG2	liver:	n/a	chr17:67150532-67150543

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67149952..67151489-chr17:67155682..67158035,2	K562	blood:

Variant related genes	Relation type
ABCA10	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv470598	chr17:67081830-67212595	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv575930	chr17:67120025-67212031	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv457888	chr17:67149973-67226643	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv575931	chr17:67149973-67226643	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv575932	chr17:67149973-67327806	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67114600-67162800	Weak transcription	Brain Angular Gyrus	brain
2	chr17:67127000-67150600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:67132000-67151600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr17:67138000-67154000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr17:67138200-67150600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr17:67138200-67151200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr17:67138200-67151600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr17:67138200-67152200	Weak transcription	Fetal Muscle Leg	muscle
9	chr17:67138600-67155400	Weak transcription	Brain Anterior Caudate	brain
10	chr17:67138800-67152000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr17:67138800-67162800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr17:67138800-67182000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr17:67140200-67154000	Weak transcription	Fetal Lung	lung
14	chr17:67141600-67155400	Weak transcription	Colon Smooth Muscle	Colon
15	chr17:67141800-67171800	Weak transcription	GM12878-XiMat	blood
16	chr17:67142200-67152400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr17:67142400-67151000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr17:67143800-67154200	Weak transcription	Right Ventricle	heart
19	chr17:67144000-67151600	Weak transcription	Fetal Intestine Large	intestine
20	chr17:67144000-67163200	Weak transcription	Left Ventricle	heart
21	chr17:67144000-67175800	Weak transcription	Gastric	stomach
22	chr17:67144000-67236000	Weak transcription	Psoas Muscle	Psoas
23	chr17:67147400-67150800	Strong transcription	Ovary	ovary
24	chr17:67147600-67150800	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr17:67147600-67151400	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr17:67147800-67150600	Strong transcription	Adipose Nuclei	Adipose
27	chr17:67148200-67150800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr17:67148400-67171600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr17:67148600-67175600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr17:67148800-67190200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr17:67149600-67153600	Weak transcription	Pancreas	Pancrea
32	chr17:67150200-67152400	Weak transcription	Fetal Intestine Small	intestine
33	chr17:67150200-67174400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr17:67150400-67151200	Weak transcription	Liver	Liver

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