The 2.0 version of rSNPBase

Variant report

Variant rs189442123
Chromosome Location chr6:33536141-33536142
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:33516800-33537600 Weak transcription Primary T cells fromperipheralblood blood
2 chr6:33530400-33536800 Weak transcription K562 blood
3 chr6:33530400-33537600 Weak transcription GM12878-XiMat blood
4 chr6:33530400-33538800 Weak transcription Esophagus oesophagus
5 chr6:33531000-33538200 Weak transcription Primary T cells from cord blood blood
6 chr6:33531400-33538400 Weak transcription Osteobl bone
7 chr6:33533200-33538400 Weak transcription Primary hematopoietic stem cells short term culture blood
8 chr6:33533200-33538600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr6:33533600-33537600 Weak transcription Fetal Thymus thymus
10 chr6:33533800-33538400 Weak transcription Rectal Smooth Muscle rectum
11 chr6:33534200-33538600 Weak transcription Fetal Muscle Leg muscle
12 chr6:33534400-33538400 Weak transcription Duodenum Mucosa Duodenum
13 chr6:33534600-33538400 Weak transcription Stomach Smooth Muscle stomach
14 chr6:33534600-33538600 Weak transcription Fetal Intestine Small intestine
15 chr6:33534600-33538800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
16 chr6:33534800-33537800 Weak transcription Thymus Thymus
17 chr6:33534800-33538400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr6:33534800-33538400 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr6:33535000-33536200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr6:33535000-33538200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr6:33535000-33538400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr6:33535000-33538600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr6:33535000-33538600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr6:33535000-33538600 Weak transcription HMEC breast
25 chr6:33535200-33538400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr6:33535200-33538400 Weak transcription Muscle Satellite Cultured Cells --
27 chr6:33535400-33538400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr6:33535600-33536200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
29 chr6:33535600-33536200 Enhancers Brain Germinal Matrix brain
30 chr6:33535600-33538400 Weak transcription NHEK skin
31 chr6:33535600-33538400 Weak transcription NHLF lung
32 chr6:33536000-33536200 Enhancers Fetal Heart heart
33 chr6:33536000-33536400 Weak transcription Fetal Stomach stomach
34 chr6:33536000-33537800 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr6:33536000-33538200 Weak transcription Fetal Brain Male brain
36 chr6:33536000-33538400 Weak transcription HUES6 Cell Line embryonic stem cell
37 chr6:33536000-33538400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
38 chr6:33536000-33538400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr6:33536000-33538400 Weak transcription Fetal Adrenal Gland Adrenal Gland
40 chr6:33536000-33538600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr6:33536000-33538600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr6:33536000-33538600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015