Variant report

Variant	rs189443382
Chromosome Location	chr15:79104533-79104534
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:79102454-79104826	SK-N-SH	brain:	n/a	chr15:79104011-79104024 chr15:79104004-79104025 chr15:79102942-79102951 chr15:79104009-79104027 chr15:79104011-79104024 chr15:79102942-79102955 chr15:79104014-79104027 chr15:79104010-79104026
2	CTCF	chr15:79104460-79104610	HRPEpiC	eye:	n/a	n/a
3	CCNT2	chr15:79104434-79104634	K562	blood:	n/a	chr15:79104501-79104510
4	CTCF	chr15:79103656-79104679	A549	lung:	n/a	chr15:79104011-79104024 chr15:79104004-79104025 chr15:79104009-79104027 chr15:79104011-79104024 chr15:79104014-79104027 chr15:79104010-79104026
5	MAZ	chr15:79102260-79104839	IMR90	lung:	n/a	chr15:79102334-79102343

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79102834..79106085-chr15:79164025..79165931,3	MCF-7	breast:

Variant related genes	Relation type
ADAMTS7	TF binding region
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3354433	chr15:79102422-79105270	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3334366	chr15:79102897-79105495	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79102400-79104600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
2	chr15:79102800-79104600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
3	chr15:79102800-79104600	Active TSS	Gastric	stomach
4	chr15:79102800-79104800	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr15:79103000-79104600	Active TSS	Psoas Muscle	Psoas
6	chr15:79103400-79104600	Active TSS	Hela-S3	cervix
7	chr15:79103800-79104600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:79103800-79104600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:79103800-79104600	Active TSS	Fetal Brain Female	brain
10	chr15:79103800-79104600	Enhancers	Pancreas	Pancrea
11	chr15:79103800-79104800	Enhancers	Fetal Brain Male	brain
12	chr15:79103800-79105200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:79103800-79105400	Enhancers	Spleen	Spleen
14	chr15:79104000-79104600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:79104000-79104600	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr15:79104000-79104600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:79104000-79104600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr15:79104000-79104600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:79104000-79104600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:79104000-79104600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:79104000-79104600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:79104000-79104600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:79104000-79104600	Flanking Active TSS	Brain Germinal Matrix	brain
24	chr15:79104000-79104600	Flanking Active TSS	Brain Hippocampus Middle	brain
25	chr15:79104000-79104600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
26	chr15:79104000-79104600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr15:79104000-79104600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
28	chr15:79104000-79104600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
29	chr15:79104000-79104600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
30	chr15:79104000-79104600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
31	chr15:79104000-79104600	Flanking Active TSS	NH-A	brain
32	chr15:79104000-79104600	Flanking Active TSS	NHLF	lung
33	chr15:79104000-79104800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:79104000-79104800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr15:79104000-79104800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:79104000-79104800	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr15:79104000-79104800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
38	chr15:79104000-79104800	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr15:79104200-79104600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr15:79104200-79104600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr15:79104200-79104600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:79104200-79104600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr15:79104200-79104600	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr15:79104200-79104600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:79104200-79104600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:79104200-79104600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr15:79104200-79104600	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr15:79104200-79104600	Flanking Active TSS	Brain Substantia Nigra	brain
49	chr15:79104200-79104600	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr15:79104200-79104600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

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