Variant report

Variant	rs189461519
Chromosome Location	chr6:36987833-36987834
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36987509..36988444-chr6:37177937..37178601,3	K562	blood:
2	chr6:36985829..36988521-chr6:36988646..36990558,2	K562	blood:
3	chr6:36987000..36988996-chr6:36992167..36994325,2	MCF-7	breast:
4	chr6:36928588..36930558-chr6:36986253..36988587,2	K562	blood:
5	chr6:36985845..36988567-chr6:37138212..37140631,3	K562	blood:
6	chr6:36980695..36984451-chr6:36985282..36988423,5	K562	blood:
7	chr6:36986111..36987939-chr6:37176127..37178450,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction
ENSG00000146192	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv885816	chr6:36965099-36999682	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv515488	chr6:36978745-36989587	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	esv3436059	chr6:36986674-36990872	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36975400-36988600	Weak transcription	Gastric	stomach
2	chr6:36975600-36988200	Weak transcription	Esophagus	oesophagus
3	chr6:36975600-36989600	Weak transcription	Thymus	Thymus
4	chr6:36983400-36995000	Weak transcription	Lung	lung
5	chr6:36984800-36989000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:36985200-36988200	Genic enhancers	Primary B cells from peripheral blood	blood
7	chr6:36985600-36988800	Enhancers	Fetal Heart	heart
8	chr6:36985800-36988200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:36985800-36988200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:36986000-36989200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:36986000-36989600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:36986200-36989000	Enhancers	Pancreas	Pancrea
13	chr6:36986400-36988200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:36986400-36988600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:36986400-36989400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:36986400-36989400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:36986400-36989400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:36986400-36989600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:36986400-36990000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:36986600-36989600	Weak transcription	HSMM	muscle
21	chr6:36986600-36989600	Weak transcription	HUVEC	blood vessel
22	chr6:36986600-36991000	Weak transcription	Stomach Mucosa	stomach
23	chr6:36986600-36992600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:36986800-37006600	Weak transcription	Colonic Mucosa	Colon
25	chr6:36987000-36988000	Weak transcription	Fetal Intestine Small	intestine
26	chr6:36987000-36990200	Weak transcription	Adipose Nuclei	Adipose
27	chr6:36987000-36991200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:36987000-36991800	Strong transcription	GM12878-XiMat	blood
29	chr6:36987000-36993200	Weak transcription	Placenta	Placenta
30	chr6:36987000-36996800	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr6:36987000-36996800	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr6:36987200-36988200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:36987200-36988200	Weak transcription	K562	blood
34	chr6:36987200-36989200	Weak transcription	Primary T cells from cord blood	blood
35	chr6:36987200-36989200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:36987200-36989200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:36987200-36989200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr6:36987200-36989200	Weak transcription	Fetal Thymus	thymus
39	chr6:36987200-36989400	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:36987200-36989400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr6:36987200-36989400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:36987200-36989400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:36987200-36989400	Weak transcription	A549	lung
44	chr6:36987200-36989600	Weak transcription	NH-A	brain
45	chr6:36987200-36989600	Weak transcription	NHLF	lung
46	chr6:36987200-36990000	Strong transcription	Spleen	Spleen
47	chr6:36987200-36993800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:36987200-36995000	Strong transcription	Primary B cells from cord blood	blood
49	chr6:36987200-36997200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:36987400-36988200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links