Variant report

Variant	rs189466989
Chromosome Location	chr3:51318413-51318414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	esv3345273	chr3:51318261-51318627	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51288200-51319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:51296400-51318800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:51298000-51320800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:51298400-51319000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:51299600-51320800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:51305000-51318800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:51308200-51323000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:51311200-51319200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:51312200-51319000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:51312200-51319200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:51313000-51322800	Weak transcription	HSMMtube	muscle
12	chr3:51313000-51323800	Weak transcription	Fetal Brain Male	brain
13	chr3:51313400-51321800	Weak transcription	Right Ventricle	heart
14	chr3:51313400-51322800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:51315400-51350000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:51315600-51319000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:51316000-51320600	Weak transcription	Fetal Brain Female	brain
18	chr3:51316600-51318600	Enhancers	Brain Substantia Nigra	brain
19	chr3:51317000-51319800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:51317400-51319000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:51317800-51319000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:51317800-51320600	Weak transcription	Brain Angular Gyrus	brain
23	chr3:51317800-51322200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:51318000-51322000	Weak transcription	Brain Anterior Caudate	brain
25	chr3:51318200-51319200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr3:51318200-51320600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:51318200-51320800	Weak transcription	Brain Hippocampus Middle	brain
28	chr3:51318200-51328600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:51318400-51319000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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