The 2.0 version of rSNPBase

Variant report

Variant rs189475473
Chromosome Location chr15:60828774-60828775
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:60772800-60846800 Weak transcription Primary B cells from cord blood blood
2 chr15:60794800-60830400 Weak transcription H9 Cell Line embryonic stem cell
3 chr15:60804200-60850200 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr15:60804800-60837400 Weak transcription Fetal Intestine Small intestine
5 chr15:60806800-60834400 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr15:60806800-60834600 Weak transcription Fetal Muscle Trunk muscle
7 chr15:60806800-60849600 Weak transcription Aorta Aorta
8 chr15:60807000-60834200 Weak transcription Stomach Smooth Muscle stomach
9 chr15:60812400-60834600 Weak transcription Gastric stomach
10 chr15:60813000-60829600 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr15:60813000-60830400 Weak transcription H1 Cell Line embryonic stem cell
12 chr15:60813000-60830600 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr15:60816000-60834400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr15:60818600-60833400 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr15:60818600-60834400 Weak transcription Spleen Spleen
16 chr15:60818600-60834600 Weak transcription Fetal Muscle Leg muscle
17 chr15:60818800-60829400 Weak transcription Esophagus oesophagus
18 chr15:60818800-60829600 Weak transcription HUES48 Cell Line embryonic stem cell
19 chr15:60818800-60834400 Weak transcription Fetal Kidney kidney
20 chr15:60820000-60833600 Weak transcription Fetal Brain Female brain
21 chr15:60820200-60829400 Weak transcription Pancreas Pancrea
22 chr15:60820200-60829400 Weak transcription Right Atrium heart
23 chr15:60820400-60829600 Weak transcription Fetal Thymus thymus
24 chr15:60821200-60832600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr15:60821200-60833600 Weak transcription Right Ventricle heart
26 chr15:60821200-60834000 Weak transcription Duodenum Mucosa Duodenum
27 chr15:60821400-60833800 Weak transcription Fetal Heart heart
28 chr15:60822400-60834400 Weak transcription Lung lung
29 chr15:60822400-60842400 Weak transcription Primary B cells from peripheral blood blood
30 chr15:60822600-60834600 Weak transcription Ovary ovary
31 chr15:60823000-60830200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
32 chr15:60823600-60844200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr15:60823600-60844600 Weak transcription HepG2 liver
34 chr15:60823800-60829800 Weak transcription Primary T cells from cord blood blood
35 chr15:60824200-60834000 Enhancers Skeletal Muscle Female skeletal muscle
36 chr15:60824200-60834200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
37 chr15:60824200-60838000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
38 chr15:60824400-60829600 Enhancers Primary T helper cells PMA-I stimulated --
39 chr15:60824600-60834000 Enhancers Skeletal Muscle Male skeletal muscle
40 chr15:60824600-60838200 Enhancers Primary T helper cells fromperipheralblood blood
41 chr15:60824600-60845600 Enhancers Primary T killer naive cells fromperipheralblood blood
42 chr15:60824800-60829000 Enhancers Primary T killer memory cells from peripheral blood blood
43 chr15:60825200-60846000 Enhancers Primary T helper naive cells from peripheral blood blood
44 chr15:60825400-60838400 Enhancers Primary T helper naive cells fromperipheralblood blood
45 chr15:60826200-60832600 Weak transcription GM12878-XiMat blood
46 chr15:60826800-60829400 Enhancers Primary T regulatory cells fromperipheralblood blood
47 chr15:60827000-60828800 Enhancers Fetal Adrenal Gland Adrenal Gland
48 chr15:60827400-60830200 Weak transcription iPS-20b Cell Line embryonic stem cell
49 chr15:60827400-60833600 Weak transcription Fetal Brain Male brain
50 chr15:60827600-60829400 Weak transcription iPS-15b Cell Line embryonic stem cell

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Last update: Aug 31, 2015