Variant report

Variant	rs189501345
Chromosome Location	chr15:72670364-72670365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:72670205-72670387	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72667344..72672450-chr15:72764755..72768100,8	K562	blood:
2	chr15:72521644..72524080-chr15:72668948..72670929,2	MCF-7	breast:
3	chr15:72669000..72671381-chr15:72700452..72702096,2	MCF-7	breast:
4	chr15:72666558..72670735-chr15:72765041..72769475,12	MCF-7	breast:
5	chr15:72669180..72672003-chr15:72765406..72767515,3	K562	blood:
6	chr15:72668155..72670512-chr20:49346499..49348280,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
HEXA	TF binding region
ENSG00000260729	TF binding region
ENSG00000261423	Chromatin interaction
ENSG00000166233	Chromatin interaction
ENSG00000067225	Chromatin interaction
ENSG00000124171	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv521971	chr15:72666424-72678738	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
6	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
7	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
8	nsv984090	chr15:72670090-72673769	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72669000-72673600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:72669200-72670400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:72669200-72670400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr15:72669200-72670600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr15:72669200-72670600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:72669200-72672000	Weak transcription	HUVEC	blood vessel
7	chr15:72669200-72672600	Weak transcription	Right Atrium	heart
8	chr15:72669400-72670400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr15:72669400-72670600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr15:72669400-72670600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr15:72669800-72670400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr15:72669800-72672600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:72670000-72672400	Weak transcription	Adipose Nuclei	Adipose
14	chr15:72670000-72675200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:72670200-72672200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:72670200-72672400	Weak transcription	HepG2	liver
17	chr15:72670200-72672600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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