Variant report

Variant	rs189565108
Chromosome Location	chr15:76165086-76165087
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv984093	chr15:76164797-76168564	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76137200-76166200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:76137800-76165800	Weak transcription	Liver	Liver
3	chr15:76137800-76166000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:76137800-76188400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:76138000-76179600	Weak transcription	Small Intestine	intestine
6	chr15:76138200-76166000	Weak transcription	Aorta	Aorta
7	chr15:76138200-76166000	Weak transcription	Colon Smooth Muscle	Colon
8	chr15:76138200-76166000	Weak transcription	Pancreas	Pancrea
9	chr15:76138200-76166000	Weak transcription	Spleen	Spleen
10	chr15:76138200-76183000	Weak transcription	Hela-S3	cervix
11	chr15:76138200-76195200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:76138200-76195400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:76138400-76184000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:76138800-76166000	Weak transcription	Esophagus	oesophagus
15	chr15:76138800-76169200	Weak transcription	Psoas Muscle	Psoas
16	chr15:76140000-76165800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr15:76140000-76184000	Weak transcription	Fetal Kidney	kidney
18	chr15:76140400-76166000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:76140600-76165600	Weak transcription	Fetal Brain Male	brain
20	chr15:76141400-76195200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:76141600-76166000	Weak transcription	NHLF	lung
22	chr15:76144800-76165800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr15:76145200-76195200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr15:76146200-76166000	Weak transcription	Right Ventricle	heart
25	chr15:76146400-76166000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:76146400-76166000	Weak transcription	Lung	lung
27	chr15:76148400-76166000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr15:76149000-76195600	Weak transcription	Colonic Mucosa	Colon
29	chr15:76149400-76166000	Weak transcription	Fetal Intestine Small	intestine
30	chr15:76151800-76166000	Weak transcription	HUVEC	blood vessel
31	chr15:76152800-76193400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr15:76153400-76168800	Weak transcription	Brain Substantia Nigra	brain
33	chr15:76154400-76165800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:76154400-76166000	Weak transcription	NHDF-Ad	bronchial
35	chr15:76155600-76166000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:76155800-76165800	Weak transcription	Fetal Brain Female	brain
37	chr15:76155800-76165800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr15:76155800-76166400	Weak transcription	HepG2	liver
39	chr15:76156400-76165800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:76158200-76166000	Weak transcription	Primary T cells from cord blood	blood
41	chr15:76158600-76165800	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr15:76159400-76166200	Weak transcription	A549	lung
43	chr15:76159600-76166000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr15:76159800-76165800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:76159800-76166000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr15:76159800-76195400	Weak transcription	Brain Hippocampus Middle	brain
47	chr15:76160400-76165800	Weak transcription	Brain Angular Gyrus	brain
48	chr15:76160800-76176000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:76161000-76182200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:76161200-76172600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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