Variant report

Variant	rs189580652
Chromosome Location	chr21:40014653-40014654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065541	chr21:40009959-40024976	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1057719	chr21:40009959-40025433	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1058663	chr21:40009959-40031681	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1055287	chr21:40013735-40031681	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40010600-40015200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr21:40012000-40016400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr21:40012400-40015600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr21:40012800-40016800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr21:40013600-40014800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr21:40014400-40016200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr21:40014400-40016200	Enhancers	Fetal Thymus	thymus
8	chr21:40014600-40014800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr21:40014600-40015000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr21:40014600-40016000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr21:40014600-40016000	Enhancers	Aorta	Aorta
12	chr21:40014600-40016200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr21:40014600-40016200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr21:40014600-40016400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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