Variant report

Variant	rs1896362
Chromosome Location	chr12:106594086-106594087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2173595	0.81[AFR][1000 genomes]
rs2173596	0.81[AFR][1000 genomes]
rs2173597	0.81[AFR][1000 genomes]
rs2559607	0.81[AFR][1000 genomes]
rs2649706	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040534	chr12:106528394-106619175	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106592000-106594400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr12:106592000-106595400	Weak transcription	Liver	Liver
3	chr12:106593400-106595800	Enhancers	Psoas Muscle	Psoas
4	chr12:106594000-106594400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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