Variant report

Variant	rs1896367
Chromosome Location	chr10:54069186-54069187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:54065577..54083492-chr10:54193846..54218961,120	MCF-7	breast:
2	chr10:54064374..54069621-chr10:54325572..54329506,5	MCF-7	breast:
3	chr10:54068768..54071357-chr10:54075695..54080723,4	MCF-7	breast:
4	chr10:54060116..54061619-chr10:54068153..54070919,2	MCF-7	breast:
5	chr10:54068229..54070730-chr10:54076005..54078630,2	K562	blood:
6	chr10:53145130..53146653-chr10:54068648..54071560,2	K562	blood:
7	chr10:54068053..54070294-chr10:54245844..54248114,2	MCF-7	breast:
8	chr10:54068750..54071230-chr10:54072937..54074524,2	K562	blood:
9	chr10:54067639..54070008-chr10:54219109..54220773,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MBL2-5	chr10:54069160-54069297	ENSG00000236671
2	lnc-MBL2-5	chr10:54069160-54069297	NONHSAT013418
3	lnc-MBL2-5	chr10:54069160-54069297	NR_038277

No data

Variant related genes	Relation type
ENSG00000107984	Chromatin interaction
ENSG00000231131	Chromatin interaction
ENSG00000236671	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12773082	0.84[ASW][hapmap];1.00[YRI][hapmap]
rs1528877	0.86[ASW][hapmap];0.84[CHD][hapmap];1.00[YRI][hapmap]
rs7917225	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv895399	chr10:53900872-54219820	Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv275139	chr10:54065821-54069336	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3501174	chr10:54068626-54069297	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3501285	chr10:54068629-54069243	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54068400-54073000	Weak transcription	Hela-S3	cervix
2	chr10:54068600-54069400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:54068800-54069200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:54068800-54069200	Enhancers	HMEC	breast
5	chr10:54068800-54069200	Enhancers	NHDF-Ad	bronchial
6	chr10:54068800-54069400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:54068800-54069600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:54068800-54072200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:54068800-54072800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:54068800-54072800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:54068800-54072800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:54068800-54072800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:54068800-54072800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:54068800-54072800	Weak transcription	HSMM	muscle
15	chr10:54068800-54072800	Weak transcription	HSMMtube	muscle
16	chr10:54068800-54072800	Weak transcription	NHLF	lung
17	chr10:54068800-54073000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:54068800-54073000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:54068800-54073000	Weak transcription	Gastric	stomach
20	chr10:54068800-54073000	Weak transcription	Left Ventricle	heart
21	chr10:54068800-54073000	Weak transcription	Pancreas	Pancrea
22	chr10:54068800-54073800	Weak transcription	Lung	lung
23	chr10:54069000-54069200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
24	chr10:54069000-54069200	Enhancers	Fetal Heart	heart
25	chr10:54069000-54069800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:54069000-54070200	Enhancers	HepG2	liver
27	chr10:54069000-54070400	Enhancers	A549	lung
28	chr10:54069000-54071000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:54069000-54071000	Weak transcription	NHEK	skin
30	chr10:54069000-54072800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:54069000-54072800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:54069000-54072800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:54069000-54072800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:54069000-54072800	Weak transcription	HUVEC	blood vessel
35	chr10:54069000-54072800	Weak transcription	NH-A	brain
36	chr10:54069000-54072800	Weak transcription	Osteobl	bone
37	chr10:54069000-54073200	Weak transcription	Placenta Amnion	Placenta Amnion

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