Variant report

Variant	rs1896368
Chromosome Location	chr10:54068904-54068905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:54065577..54083492-chr10:54193846..54218961,120	MCF-7	breast:
2	chr10:54064374..54069621-chr10:54325572..54329506,5	MCF-7	breast:
3	chr10:54068768..54071357-chr10:54075695..54080723,4	MCF-7	breast:
4	chr10:54060116..54061619-chr10:54068153..54070919,2	MCF-7	breast:
5	chr10:54068229..54070730-chr10:54076005..54078630,2	K562	blood:
6	chr10:53145130..53146653-chr10:54068648..54071560,2	K562	blood:
7	chr10:54068053..54070294-chr10:54245844..54248114,2	MCF-7	breast:
8	chr10:54068750..54071230-chr10:54072937..54074524,2	K562	blood:
9	chr10:54067639..54070008-chr10:54219109..54220773,2	MCF-7	breast:
10	chr10:54068619..54069176-chr10:54326482..54327373,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000231131	Chromatin interaction
ENSG00000236671	Chromatin interaction
ENSG00000107984	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10733905	0.81[ASN][1000 genomes]
rs7906360	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv895399	chr10:53900872-54219820	Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv275139	chr10:54065821-54069336	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3501174	chr10:54068626-54069297	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3501285	chr10:54068629-54069243	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3501396	chr10:54068737-54069185	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54068000-54069000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:54068000-54069000	Active TSS	Brain Anterior Caudate	brain
3	chr10:54068000-54069000	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr10:54068200-54069000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr10:54068200-54069000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr10:54068200-54069000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr10:54068200-54069000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr10:54068200-54069000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:54068200-54069000	Active TSS	Brain Cingulate Gyrus	brain
10	chr10:54068400-54073000	Weak transcription	Hela-S3	cervix
11	chr10:54068600-54069000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:54068600-54069000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:54068600-54069000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
14	chr10:54068600-54069000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:54068600-54069000	Flanking Active TSS	A549	lung
16	chr10:54068600-54069400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:54068800-54069000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:54068800-54069000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:54068800-54069000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr10:54068800-54069000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:54068800-54069000	Bivalent/Poised TSS	Fetal Brain Female	brain
22	chr10:54068800-54069000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr10:54068800-54069000	Flanking Active TSS	HepG2	liver
24	chr10:54068800-54069000	Enhancers	HUVEC	blood vessel
25	chr10:54068800-54069000	Flanking Active TSS	NH-A	brain
26	chr10:54068800-54069000	Enhancers	NHEK	skin
27	chr10:54068800-54069000	Enhancers	Osteobl	bone
28	chr10:54068800-54069200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:54068800-54069200	Enhancers	HMEC	breast
30	chr10:54068800-54069200	Enhancers	NHDF-Ad	bronchial
31	chr10:54068800-54069400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr10:54068800-54069600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:54068800-54072200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:54068800-54072800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:54068800-54072800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:54068800-54072800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:54068800-54072800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:54068800-54072800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:54068800-54072800	Weak transcription	HSMM	muscle
40	chr10:54068800-54072800	Weak transcription	HSMMtube	muscle
41	chr10:54068800-54072800	Weak transcription	NHLF	lung
42	chr10:54068800-54073000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:54068800-54073000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:54068800-54073000	Weak transcription	Gastric	stomach
45	chr10:54068800-54073000	Weak transcription	Left Ventricle	heart
46	chr10:54068800-54073000	Weak transcription	Pancreas	Pancrea
47	chr10:54068800-54073800	Weak transcription	Lung	lung

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