Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:54092765..54095467-chr10:54095802..54098728,3	MCF-7	breast:
2	chr10:54092984..54095026-chr10:54166953..54169179,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10824381	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11001560	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs1406474	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1406475	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1919459	0.91[EUR][1000 genomes]
rs2241529	0.86[CHB][hapmap];0.97[CHD][hapmap];0.85[MEX][hapmap];0.98[TSI][hapmap]
rs7087520	0.80[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv895399	chr10:53900872-54219820	Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv895400	chr10:54073294-54094359	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54078400-54094800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:54083200-54094400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:54086400-54097400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:54091400-54095200	Enhancers	HepG2	liver
5	chr10:54092000-54094400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:54092200-54094400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:54093000-54094400	Weak transcription	NHLF	lung
8	chr10:54093000-54096000	Enhancers	NHEK	skin
9	chr10:54093200-54096000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:54093200-54096000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:54093200-54096400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:54093400-54095800	Enhancers	A549	lung
13	chr10:54093800-54095800	Enhancers	Hela-S3	cervix
14	chr10:54093800-54096000	Enhancers	HMEC	breast
15	chr10:54094000-54094600	Flanking Active TSS	HUVEC	blood vessel
16	chr10:54094000-54095200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:54094000-54095400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:54094000-54096000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr10:54094200-54095200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr10:54094200-54095400	Enhancers	NH-A	brain

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