Variant report

Variant	rs189639159
Chromosome Location	chr1:47366766-47366767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:47366730-47366780	HIPEpiC	eye:	n/a
2	chr1:47366730-47366780	HUVEC	blood vessel:	n/a
3	chr1:47366730-47366780	HEK293	kidney:	embryo
4	chr1:47366730-47366780	HRE	kidney:	n/a
5	chr1:47366730-47366780	SK-N-MC	brain:	n/a
6	chr1:47366730-47366780	GM12878	blood:	n/a
7	chr1:47366730-47366780	HMEC	breast:	n/a
8	chr1:47366730-47366780	NH-A	brain:	n/a
9	chr1:47366730-47366780	U87	brain:	n/a
10	chr1:47366730-47366780	GM19239	blood:	n/a
11	chr1:47366730-47366780	ProgFib	skin:	n/a
12	chr1:47366730-47366780	PFSK-1	brain:	n/a
13	chr1:47366730-47366780	HCF	heart:	n/a
14	chr1:47366730-47366780	K562	blood:	n/a
15	chr1:47366730-47366780	ECC-1	luminal epithelium:	n/a
16	chr1:47366730-47366780	HL-60	blood:	n/a
17	chr1:47366730-47366780	GM12891	blood:	n/a
18	chr1:47366730-47366780	HPAEpiC	pulmonary alveolar:	n/a
19	chr1:47366730-47366780	AG09309	skin:	n/a
20	chr1:47366730-47366780	Hepatocyte	liver:	n/a
21	chr1:47366730-47366780	GM12892	blood:	n/a
22	chr1:47366730-47366780	Caco-2	colon:	n/a
23	chr1:47366730-47366780	AoSMC	blood vessel:	n/a
24	chr1:47366730-47366780	MCF10A-Er-Src	breast:	n/a
25	chr1:47366730-47366780	AG04450	lung:	fetal
26	chr1:47366730-47366780	HCM	heart:	n/a
27	chr1:47366730-47366780	NHDF-neo	bronchial:	n/a
28	chr1:47366730-47366780	GM06990	blood:	n/a
29	chr1:47366730-47366780	HRCEpiC	kidney:	n/a
30	chr1:47366730-47366780	HEEpiC	esophagus:	n/a
31	chr1:47366730-47366780	AG04449	skin:	fetal
32	chr1:47366730-47366780	HNPCEpiC	eye:	n/a
33	chr1:47366730-47366780	SAEC	small airway:	n/a
34	chr1:47366730-47366780	PANC-1	pancreas:	n/a
35	chr1:47366730-47366780	Hela-S3	cervix:	n/a
36	chr1:47366730-47366780	BE2_C	brain:	n/a
37	chr1:47366730-47366780	HCT-116	colon:	n/a
38	chr1:47366730-47366780	RPTEC	kidney:	n/a
39	chr1:47366730-47366780	IMR90	lung:	fetal
40	chr1:47366730-47366780	MCF-7	breast:	n/a
41	chr1:47366730-47366780	NHBE	bronchial:	n/a
42	chr1:47366730-47366780	T-47D	breast:	n/a
43	chr1:47366730-47366780	PrEC	prostate:	n/a
44	chr1:47366730-47366780	CMK	blood:	n/a
45	chr1:47366730-47366780	BJ	skin:	n/a
46	chr1:47366730-47366780	LNCaP	prostate:	n/a
47	chr1:47366730-47366780	SK-N-SH_RA	brain:	n/a
48	chr1:47366730-47366780	HCPEpiC	choroid plexus:	n/a
49	chr1:47366730-47366780	HepG2	liver:	n/a
50	chr1:47366730-47366780	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
CYP4Z2P	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013048	chr1:47132831-47377364	Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv534955	chr1:47132831-47377364	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv871958	chr1:47350374-47517123	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1009338	chr1:47358532-47555253	Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv2763300	chr1:47358532-47628774	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv870695	chr1:47363893-47502714	Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv871288	chr1:47363893-47507808	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv871377	chr1:47363893-47517123	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links