Variant report

Variant	rs189640794
Chromosome Location	chr4:15615225-15615226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv518830	chr4:15610771-15672200	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv521183	chr4:15610771-15692136	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv3376437	chr4:15613963-15626944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3464784	chr4:15613969-15626901	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3464785	chr4:15613969-15626901	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15537400-15621000	Weak transcription	Hela-S3	cervix
2	chr4:15550000-15617800	Weak transcription	Thymus	Thymus
3	chr4:15565400-15621400	Weak transcription	Esophagus	oesophagus
4	chr4:15568400-15655600	Weak transcription	Gastric	stomach
5	chr4:15575200-15618000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:15589800-15621400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:15590000-15615600	Weak transcription	Lung	lung
8	chr4:15590600-15626400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr4:15593800-15621200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:15594600-15617800	Weak transcription	Right Ventricle	heart
11	chr4:15596600-15616400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:15597200-15620600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr4:15600600-15620800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:15600800-15653000	Weak transcription	Colonic Mucosa	Colon
15	chr4:15601000-15651600	Weak transcription	Small Intestine	intestine
16	chr4:15602000-15626000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr4:15602200-15621200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr4:15602400-15615600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:15602600-15615800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:15602600-15655600	Weak transcription	Pancreas	Pancrea
21	chr4:15603000-15624400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr4:15603800-15626800	Weak transcription	NHLF	lung
23	chr4:15604200-15617800	Weak transcription	Spleen	Spleen
24	chr4:15604600-15615600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:15604600-15615600	Weak transcription	Aorta	Aorta
26	chr4:15604600-15615600	Weak transcription	Fetal Intestine Small	intestine
27	chr4:15604600-15615600	Weak transcription	Fetal Stomach	stomach
28	chr4:15604800-15615600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:15604800-15615600	Weak transcription	Ovary	ovary
30	chr4:15604800-15617800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr4:15605200-15615600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr4:15605400-15615600	Weak transcription	Fetal Brain Female	brain
33	chr4:15605400-15615600	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:15605400-15625800	Weak transcription	HMEC	breast
35	chr4:15605600-15620400	Weak transcription	Colon Smooth Muscle	Colon
36	chr4:15605600-15624400	Weak transcription	K562	blood
37	chr4:15605800-15615600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:15605800-15618400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:15605800-15621000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr4:15605800-15650200	Weak transcription	Stomach Mucosa	stomach
41	chr4:15606000-15615600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr4:15606000-15621600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr4:15606000-15633800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr4:15606200-15615600	Weak transcription	Brain Germinal Matrix	brain
45	chr4:15606400-15615600	Weak transcription	Left Ventricle	heart
46	chr4:15606400-15618000	Weak transcription	Brain Hippocampus Middle	brain
47	chr4:15606800-15620600	Weak transcription	Adipose Nuclei	Adipose
48	chr4:15607000-15615400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr4:15607000-15620800	Weak transcription	A549	lung
50	chr4:15607200-15617800	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links