Variant report

Variant	rs189641971
Chromosome Location	chr2:211998724-211998725
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875773	chr2:211973600-212041403	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3345007	chr2:211998607-212001055	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3371809	chr2:211998707-212000955	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211994600-211998800	Enhancers	Hela-S3	cervix
2	chr2:211996400-211998800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:211996400-211998800	Enhancers	HSMM	muscle
4	chr2:211996600-211998800	Enhancers	NH-A	brain
5	chr2:211996800-211998800	Enhancers	HMEC	breast
6	chr2:211996800-211998800	Enhancers	HUVEC	blood vessel
7	chr2:211996800-211999000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:211996800-211999000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:211997000-211998800	Enhancers	HSMMtube	muscle
10	chr2:211997000-211998800	Enhancers	NHEK	skin
11	chr2:211997000-211998800	Enhancers	Osteobl	bone
12	chr2:211997400-211998800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:211997400-211998800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:211997600-211998800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:211998200-211998800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:211998600-211998800	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links