Variant report

Variant	rs189660442
Chromosome Location	chr10:1093510-1093511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:22)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:22 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:1093473-1093673	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:1093439-1093758	GM12878	blood:	n/a	n/a
3	POLR2A	chr10:1093438-1096809	GM18505	blood:	n/a	n/a
4	POLR2A	chr10:1093373-1093838	PFSK-1	brain:	n/a	n/a
5	POLR2A	chr10:1093433-1093732	K562	blood:	n/a	n/a
6	CHD1	chr10:1093464-1096968	IMR90	lung:	n/a	chr10:1095411-1095421 chr10:1095080-1095087 chr10:1094729-1094739 chr10:1095408-1095418
7	POLR2A	chr10:1093402-1097928	K562	blood:	n/a	n/a
8	POLR2A	chr10:1093464-1096904	GM12878	blood:	n/a	n/a
9	POLR2A	chr10:1093391-1097389	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr10:1093480-1093711	K562	blood:	n/a	n/a
11	POLR2A	chr10:1093474-1093776	GM12878	blood:	n/a	n/a
12	POLR2A	chr10:1093468-1093741	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr10:1093466-1093681	GM12878	blood:	n/a	n/a
14	POLR2A	chr10:1093491-1093619	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr10:1093476-1093758	A549	lung:	n/a	n/a
16	POLR2A	chr10:1093468-1093677	ECC-1	luminal epithelium:	n/a	n/a
17	POLR2A	chr10:1093388-1093760	SK-N-MC	brain:	n/a	n/a
18	POLR2A	chr10:1093383-1096642	PBDE	blood:	n/a	n/a
19	POLR2A	chr10:1093432-1097602	IMR90	lung:	n/a	n/a
20	POLR2A	chr10:1093445-1096169	Raji	blood:	n/a	n/a
21	POLR2A	chr10:1093469-1098007	GM12891	blood:	n/a	n/a
22	TCF12	chr10:1093470-1093716	GM12878	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:1093376..1095260-chr10:1119342..1122305,3	MCF-7	breast:
2	chr10:1090197..1098635-chr10:1098667..1108160,39	K562	blood:
3	chr10:1086551..1092852-chr10:1093358..1097808,14	MCF-7	breast:
4	chr10:975330..979257-chr10:1093215..1097529,5	K562	blood:
5	chr10:975330..979545-chr10:1093428..1097529,6	K562	blood:
6	chr10:976647..980794-chr10:1093154..1097319,8	MCF-7	breast:
7	chr10:1034471..1036574-chr10:1093266..1095946,3	K562	blood:
8	chr10:1032470..1034485-chr10:1092422..1096343,5	MCF-7	breast:

No data

Variant related genes	Relation type
WDR37	TF binding region
ENSG00000205740	Chromatin interaction
ENSG00000229869	Chromatin interaction
ENSG00000047056	Chromatin interaction
ENSG00000107937	Chromatin interaction
ENSG00000238924	Chromatin interaction
ENSG00000107929	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
3	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
11	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv1050577	chr10:986723-1277854	Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv540409	chr10:986723-1277854	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv949405	chr10:1010464-1376105	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1048254	chr10:1016006-1146595	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
16	nsv1040178	chr10:1024910-1126104	Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
17	nsv540410	chr10:1024910-1126104	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
18	nsv894722	chr10:1058837-1274538	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
19	nsv1046220	chr10:1064024-1188998	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
20	nsv894723	chr10:1073684-1259485	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
21	nsv5532	chr10:1079499-1101700	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
22	nsv894724	chr10:1084942-1116294	Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
23	esv3497616	chr10:1091673-1096308	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
24	esv3497617	chr10:1091673-1096308	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
25	esv3370459	chr10:1091802-1094475	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
26	esv2483699	chr10:1092125-1093982	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
27	esv3452775	chr10:1092302-1094050	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
28	esv3452786	chr10:1092302-1094050	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
29	nsv512136	chr10:1092349-1095373	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
30	esv990965	chr10:1092581-1093980	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
31	esv3409334	chr10:1092669-1093539	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1035000-1094000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:1082600-1094000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:1089400-1093600	Weak transcription	Fetal Kidney	kidney
4	chr10:1089600-1093600	Weak transcription	Placenta	Placenta
5	chr10:1090000-1093600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:1090000-1093600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:1091000-1093800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:1091400-1093600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:1092400-1093600	Weak transcription	Primary T cells from cord blood	blood
10	chr10:1092400-1093600	Weak transcription	Fetal Brain Male	brain
11	chr10:1092400-1093600	Weak transcription	A549	lung
12	chr10:1092400-1093600	Weak transcription	HSMM	muscle
13	chr10:1092400-1094000	Weak transcription	Small Intestine	intestine
14	chr10:1092600-1093600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:1092600-1093600	Weak transcription	Primary B cells from cord blood	blood
16	chr10:1092600-1093600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr10:1093200-1093600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:1093200-1093600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr10:1093200-1093600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:1093200-1093600	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr10:1093200-1093600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr10:1093200-1093600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:1093200-1093600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr10:1093200-1093600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr10:1093200-1093600	Enhancers	Fetal Stomach	stomach
26	chr10:1093200-1093600	Enhancers	Stomach Mucosa	stomach
27	chr10:1093200-1093800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:1093200-1093800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr10:1093200-1093800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr10:1093200-1093800	Enhancers	Ovary	ovary
31	chr10:1093400-1093600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
32	chr10:1093400-1093600	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:1093400-1093600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:1093400-1093600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:1093400-1093600	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr10:1093400-1093600	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr10:1093400-1093600	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr10:1093400-1093600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr10:1093400-1093600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:1093400-1093600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:1093400-1093600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:1093400-1093600	Enhancers	Primary hematopoietic stem cells	blood
43	chr10:1093400-1093600	Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr10:1093400-1093600	Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr10:1093400-1093600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:1093400-1093600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:1093400-1093600	Active TSS	Brain Angular Gyrus	brain
48	chr10:1093400-1093600	Active TSS	Brain Germinal Matrix	brain
49	chr10:1093400-1093600	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr10:1093400-1093600	Enhancers	Brain Substantia Nigra	brain

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