Variant report

Variant	rs189685583
Chromosome Location	chr1:95086217-95086218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95079718..95082412-chr1:95085713..95087293,2	MCF-7	breast:
2	chr1:95084398..95087368-chr1:95088701..95090405,2	MCF-7	breast:
3	chr1:95005520..95008552-chr1:95083214..95086682,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-F3-2	chr1:95086187-95086543	XLOC_000922

Variant related genes	Relation type
ENSG00000235565	Chromatin interaction
ENSG00000117525	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv947122	chr1:95081067-95089572	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv519997	chr1:95083836-95113417	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1001230	chr1:95085184-95108531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95065600-95087200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:95075200-95088400	Weak transcription	Fetal Lung	lung
3	chr1:95080800-95086800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:95082600-95088200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:95082800-95088200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:95083000-95087600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:95083000-95087800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:95083200-95086400	Weak transcription	A549	lung
9	chr1:95083400-95087000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:95083400-95088600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:95083800-95086400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:95083800-95086800	Weak transcription	NHLF	lung
13	chr1:95083800-95087200	Weak transcription	Osteobl	bone
14	chr1:95083800-95088600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr1:95084000-95086400	Weak transcription	Colonic Mucosa	Colon
16	chr1:95084000-95086600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr1:95084000-95086800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:95084000-95086800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:95084000-95087000	Weak transcription	HepG2	liver
20	chr1:95084000-95087600	Weak transcription	NHDF-Ad	bronchial
21	chr1:95084000-95088200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr1:95084800-95090200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:95085000-95090200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:95085000-95090600	Enhancers	HMEC	breast
25	chr1:95085200-95086800	Enhancers	Hela-S3	cervix
26	chr1:95085200-95087200	Enhancers	Gastric	stomach
27	chr1:95085200-95087200	Enhancers	Lung	lung
28	chr1:95085200-95087800	Enhancers	Pancreas	Pancrea
29	chr1:95085200-95087800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr1:95085200-95089600	Enhancers	Fetal Intestine Small	intestine
31	chr1:95085200-95089800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr1:95085200-95090000	Enhancers	NH-A	brain
33	chr1:95085200-95090600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:95085200-95090600	Enhancers	Placenta Amnion	Placenta Amnion
35	chr1:95085200-95090800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr1:95085400-95090000	Enhancers	Stomach Mucosa	stomach
37	chr1:95085600-95088200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr1:95085800-95086400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr1:95085800-95086400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:95085800-95087000	Weak transcription	HSMM	muscle
41	chr1:95085800-95087400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr1:95085800-95087800	Enhancers	Duodenum Mucosa	Duodenum
43	chr1:95085800-95089200	Enhancers	Esophagus	oesophagus
44	chr1:95085800-95089800	Enhancers	Fetal Intestine Large	intestine
45	chr1:95086000-95087200	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr1:95086000-95087200	Enhancers	Fetal Stomach	stomach
47	chr1:95086200-95087000	Flanking Active TSS	NHEK	skin
48	chr1:95086200-95087200	Enhancers	Small Intestine	intestine
49	chr1:95086200-95088000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr1:95086200-95088600	Enhancers	Rectal Mucosa Donor 29	rectum

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