Variant report

Variant	rs189688746
Chromosome Location	chr13:50326150-50326151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900072	chr13:50266109-50381016	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv900073	chr13:50286218-50381016	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv1818134	chr13:50306897-50374102	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv900074	chr13:50317104-50381016	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1038	chr13:50324773-50359990	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50266400-50349000	Weak transcription	Esophagus	oesophagus
2	chr13:50273200-50333800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:50290000-50334000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr13:50294400-50333000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr13:50296200-50330400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:50296600-50330400	Weak transcription	Small Intestine	intestine
7	chr13:50296600-50338600	Weak transcription	Ovary	ovary
8	chr13:50298000-50327600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:50299200-50327600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr13:50300600-50345600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:50301200-50327800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr13:50302800-50333800	Weak transcription	Thymus	Thymus
13	chr13:50303200-50334000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:50306000-50351600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr13:50306200-50334200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr13:50306200-50336200	Weak transcription	Adipose Nuclei	Adipose
17	chr13:50306800-50333800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr13:50308000-50356000	Weak transcription	Fetal Kidney	kidney
19	chr13:50308200-50327400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr13:50308200-50327600	Weak transcription	Lung	lung
21	chr13:50314800-50327600	Weak transcription	Gastric	stomach
22	chr13:50315200-50336000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr13:50317600-50343600	Weak transcription	Primary T cells from cord blood	blood
24	chr13:50318800-50333800	Weak transcription	NH-A	brain
25	chr13:50319600-50333600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr13:50319600-50334800	Weak transcription	Fetal Lung	lung
27	chr13:50320000-50333600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr13:50320000-50333600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr13:50320000-50333600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr13:50320200-50327600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:50320400-50336800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr13:50320600-50326200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr13:50320600-50327600	Weak transcription	Liver	Liver
34	chr13:50320600-50327600	Weak transcription	Pancreas	Pancrea
35	chr13:50320600-50327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr13:50320600-50332200	Weak transcription	Fetal Muscle Leg	muscle
37	chr13:50320600-50332600	Weak transcription	Fetal Brain Female	brain
38	chr13:50320600-50333000	Weak transcription	Fetal Intestine Large	intestine
39	chr13:50320600-50333600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr13:50320600-50333600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr13:50320600-50333600	Weak transcription	Fetal Intestine Small	intestine
42	chr13:50320600-50333800	Weak transcription	Brain Hippocampus Middle	brain
43	chr13:50320600-50333800	Weak transcription	Fetal Stomach	stomach
44	chr13:50320600-50334800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr13:50320600-50334800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr13:50320600-50337400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr13:50320600-50337800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr13:50320800-50333400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr13:50320800-50333800	Weak transcription	Primary B cells from cord blood	blood
50	chr13:50320800-50333800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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