Variant report

Variant	rs189728424
Chromosome Location	chr1:120387163-120387164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:28)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:28 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:120387020-120387170	GM12866	blood:	n/a	n/a
2	CTCF	chr1:120387100-120387250	HFF-Myc	foreskin:	n/a	n/a
3	CTCF	chr1:120387080-120387230	HMEC	breast:	n/a	n/a
4	YY1	chr1:120386858-120387164	H1-hESC	embryonic stem cell:	n/a	n/a
5	RAD21	chr1:120386798-120387174	H1-hESC	embryonic stem cell:	n/a	n/a
6	ZMIZ1	chr1:120387086-120387184	K562	blood:	n/a	n/a
7	CTCF	chr1:120386817-120387202	A549	lung:	n/a	n/a
8	CTCF	chr1:120386867-120387203	A549	lung:	n/a	n/a
9	ZNF143	chr1:120386894-120387179	K562	blood:	n/a	n/a
10	RAD21	chr1:120386904-120387166	SK-N-SH_RA	brain:	n/a	n/a
11	CTCF	chr1:120387060-120387210	NHDF-neo	bronchial:	n/a	n/a
12	CTCF	chr1:120387060-120387210	NHLF	lung:	n/a	n/a
13	CTCF	chr1:120387080-120387230	HCM	heart:	n/a	n/a
14	CTCF	chr1:120387020-120387170	GM12872	blood:	n/a	n/a
15	CTCF	chr1:120387060-120387210	WI-38	lung:	n/a	n/a
16	CTCF	chr1:120387060-120387210	HFF	foreskin:	n/a	n/a
17	RAD21	chr1:120386924-120387216	ECC-1	luminal epithelium:	n/a	n/a
18	CTCF	chr1:120386788-120387198	K562	blood:	n/a	n/a
19	CTCF	chr1:120386772-120387239	K562	blood:	n/a	n/a
20	CTCF	chr1:120386882-120387173	H1-hESC	embryonic stem cell:	n/a	n/a
21	POU2F2	chr1:120386730-120387189	GM12878	blood:	n/a	n/a
22	CTCF	chr1:120386838-120387335	K562	blood:	n/a	n/a
23	CTCF	chr1:120387040-120387190	BE2_C	brain:	n/a	n/a
24	CTCF	chr1:120386798-120387209	A549	lung:	n/a	n/a
25	CTCF	chr1:120387040-120387190	GM12864	blood:	n/a	n/a
26	POLR2A	chr1:120387000-120387680	H1-hESC	embryonic stem cell:	n/a	n/a
27	CTCF	chr1:120386831-120387195	IMR90	lung:	n/a	n/a
28	CTCF	chr1:120387100-120387250	A549	lung:	n/a	n/a

No data

Variant related genes	Relation type
NBPF7	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932014	chr1:119476480-120471049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
2	nsv1000939	chr1:119983342-120471049	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv831215	chr1:120266449-120448469	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv428201	chr1:120267313-120697156	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	esv2757750	chr1:120267313-121226013	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	esv2758965	chr1:120267313-121226013	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv915933	chr1:120323527-120471049	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv831226	chr1:120331599-120471049	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv533996	chr1:120359524-120471049	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv872180	chr1:120366055-120412885	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv946187	chr1:120370078-120406007	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv945590	chr1:120384193-120387925	Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
13	nsv10672	chr1:120386985-120410007	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:120387000-120387200	Enhancers	K562	blood

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