Variant report

Variant	rs189758824
Chromosome Location	chr20:15657069-15657070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15652600-15657400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr20:15652600-15657400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr20:15652600-15657400	Enhancers	NHDF-Ad	bronchial
4	chr20:15652600-15657800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr20:15653200-15657400	Enhancers	HSMM	muscle
6	chr20:15653400-15660200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr20:15655000-15657400	Enhancers	Colon Smooth Muscle	Colon
8	chr20:15655000-15657800	Enhancers	Fetal Kidney	kidney
9	chr20:15655200-15657800	Enhancers	Fetal Lung	lung
10	chr20:15656600-15657400	Enhancers	Brain Germinal Matrix	brain
11	chr20:15657000-15663200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links