Variant report

Variant	rs189765170
Chromosome Location	chr17:37863695-37863696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr17:37863687-37863834	K562	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:37844202..37845987-chr17:37862738..37864585,2	K562	blood:
2	chr17:37862394..37865054-chr17:37882153..37884156,2	K562	blood:
3	chr17:37861008..37863729-chr17:37884662..37888113,4	MCF-7	breast:
4	chr17:37861753..37864572-chr17:37866139..37867731,2	MCF-7	breast:
5	chr17:37858020..37860192-chr17:37861876..37864299,2	K562	blood:
6	chr17:37852050..37854882-chr17:37862447..37865325,2	K562	blood:
7	chr17:37854371..37858847-chr17:37859204..37863861,12	MCF-7	breast:
8	chr17:37860257..37864274-chr17:37871854..37875164,5	MCF-7	breast:
9	chr17:37862305..37864519-chr17:37893058..37894844,2	MCF-7	breast:
10	chr17:37860636..37865251-chr17:37890921..37895460,5	MCF-7	breast:

No data

Variant related genes	Relation type
ERBB2	TF binding region
ENSG00000265178	Chromatin interaction
ENSG00000141741	Chromatin interaction
ENSG00000141736	Chromatin interaction
ENSG00000161395	Chromatin interaction
ENSG00000141738	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv908206	chr17:37709422-37866005	Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv908207	chr17:37709422-37922259	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv833443	chr17:37725640-37882864	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	esv1792029	chr17:37797757-37886460	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv528093	chr17:37814080-37866005	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1056234	chr17:37862605-37909988	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv908216	chr17:37863015-37879588	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37857000-37872000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr17:37858000-37885200	Weak transcription	Fetal Brain Male	brain
3	chr17:37858000-37885600	Weak transcription	Hela-S3	cervix
4	chr17:37858200-37864000	Enhancers	Liver	Liver
5	chr17:37858200-37864400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr17:37858200-37882600	Weak transcription	NHDF-Ad	bronchial
7	chr17:37858400-37879600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr17:37859000-37864000	Genic enhancers	Fetal Muscle Leg	muscle
9	chr17:37859400-37881000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr17:37859800-37864800	Weak transcription	Fetal Brain Female	brain
11	chr17:37861200-37863800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr17:37861200-37864600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr17:37861400-37883600	Weak transcription	Brain Substantia Nigra	brain
14	chr17:37861600-37864600	Weak transcription	Colon Smooth Muscle	Colon
15	chr17:37862000-37865400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:37862200-37866600	Enhancers	Primary T cells fromperipheralblood	blood
17	chr17:37862200-37877000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
18	chr17:37862200-37885200	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr17:37862400-37876800	Strong transcription	HepG2	liver
20	chr17:37862400-37877600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr17:37862400-37878800	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr17:37862400-37885400	Strong transcription	H9 Cell Line	embryonic stem cell
23	chr17:37862400-37885600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr17:37862400-37885600	Strong transcription	Fetal Stomach	stomach
25	chr17:37862400-37885800	Weak transcription	Right Atrium	heart
26	chr17:37862600-37863800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr17:37862600-37864000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
28	chr17:37862600-37866000	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr17:37862600-37866200	Genic enhancers	Placenta	Placenta
30	chr17:37862600-37866800	Genic enhancers	Fetal Muscle Trunk	muscle
31	chr17:37862600-37871400	Weak transcription	HSMM	muscle
32	chr17:37862600-37871600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr17:37862600-37885600	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr17:37862800-37863800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr17:37862800-37863800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr17:37862800-37863800	Enhancers	HMEC	breast
37	chr17:37862800-37864000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr17:37862800-37864200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr17:37862800-37864400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr17:37862800-37864600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr17:37862800-37865400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr17:37862800-37866600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr17:37862800-37872000	Weak transcription	NH-A	brain
44	chr17:37862800-37878800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr17:37862800-37883200	Weak transcription	Small Intestine	intestine
46	chr17:37862800-37885600	Strong transcription	Fetal Intestine Large	intestine
47	chr17:37863000-37864000	Enhancers	Primary B cells from cord blood	blood
48	chr17:37863000-37864000	Enhancers	Primary B cells from peripheral blood	blood
49	chr17:37863000-37864000	Enhancers	Primary T cells from cord blood	blood
50	chr17:37863000-37864000	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links