Variant report

Variant	rs189767430
Chromosome Location	chrX:73643653-73643654
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:73641312..73645233-chrX:73652537..73656511,3	MCF-7	breast:
2	chrX:73639998..73642268-chrX:73642358..73645836,3	MCF-7	breast:
3	chrX:73641524..73644343-chrX:73668070..73670153,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147100	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3429687	chrX:73639127-73643875	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73639400-73643800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chrX:73640000-73643800	Active TSS	Brain Anterior Caudate	brain
3	chrX:73640200-73647200	Weak transcription	Spleen	Spleen
4	chrX:73642800-73643800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
5	chrX:73642800-73644200	Enhancers	Fetal Heart	heart
6	chrX:73643000-73643800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chrX:73643000-73643800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chrX:73643000-73643800	Enhancers	Right Atrium	heart
9	chrX:73643000-73644000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chrX:73643000-73644000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
11	chrX:73643000-73644200	Bivalent Enhancer	Fetal Stomach	stomach
12	chrX:73643000-73651800	Weak transcription	Fetal Intestine Large	intestine
13	chrX:73643000-73656800	Weak transcription	Brain Angular Gyrus	brain
14	chrX:73643200-73643800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chrX:73643200-73643800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chrX:73643200-73643800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chrX:73643200-73643800	Enhancers	Brain Inferior Temporal Lobe	brain
18	chrX:73643200-73643800	Enhancers	Brain Substantia Nigra	brain
19	chrX:73643200-73643800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chrX:73643200-73643800	Enhancers	Ovary	ovary
21	chrX:73643200-73643800	Enhancers	HMEC	breast
22	chrX:73643200-73644000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chrX:73643200-73644200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chrX:73643200-73644200	Enhancers	Fetal Brain Male	brain
25	chrX:73643200-73644200	Enhancers	NHLF	lung
26	chrX:73643200-73644400	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chrX:73643200-73644600	Enhancers	Fetal Kidney	kidney
28	chrX:73643200-73644600	Enhancers	NH-A	brain
29	chrX:73643200-73646200	Enhancers	Liver	Liver
30	chrX:73643200-73647400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chrX:73643200-73649400	Weak transcription	Thymus	Thymus
32	chrX:73643400-73643800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chrX:73643400-73643800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chrX:73643400-73643800	Flanking Active TSS	Fetal Brain Female	brain
35	chrX:73643400-73643800	Flanking Active TSS	HSMMtube	muscle
36	chrX:73643400-73643800	Enhancers	NHDF-Ad	bronchial
37	chrX:73643400-73644000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chrX:73643400-73644000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chrX:73643400-73644000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chrX:73643400-73644000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
41	chrX:73643400-73644000	Enhancers	Brain Germinal Matrix	brain
42	chrX:73643400-73644000	Enhancers	Brain Hippocampus Middle	brain
43	chrX:73643400-73644200	Enhancers	H1 Cell Line	embryonic stem cell
44	chrX:73643400-73644200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chrX:73643400-73644200	Enhancers	Osteobl	bone
46	chrX:73643400-73644600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chrX:73643400-73644800	Bivalent Enhancer	Fetal Muscle Leg	muscle
48	chrX:73643600-73643800	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chrX:73643600-73643800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chrX:73643600-73643800	Enhancers	Muscle Satellite Cultured Cells	--

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