Variant report

Variant	rs189767750
Chromosome Location	chr11:46939361-46939362
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46933810..46936759-chr11:46937673..46939969,2	MCF-7	breast:
2	chr11:46938691..46940925-chr17:56734920..56736797,2	MCF-7	breast:
3	chr11:46846941..46849918-chr11:46939245..46941639,2	MCF-7	breast:
4	chr11:46933026..46934959-chr11:46937593..46939848,2	K562	blood:

Variant related genes	Relation type
ENSG00000175216	Chromatin interaction
ENSG00000202077	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3354576	chr11:46938801-46941349	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46937600-46939800	Active TSS	Fetal Kidney	kidney
2	chr11:46937800-46939400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr11:46937800-46939400	Flanking Active TSS	HMEC	breast
4	chr11:46937800-46939800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:46937800-46940400	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr11:46937800-46940400	Active TSS	Brain Anterior Caudate	brain
7	chr11:46937800-46940400	Active TSS	Brain Cingulate Gyrus	brain
8	chr11:46937800-46940400	Active TSS	HSMMtube	muscle
9	chr11:46938000-46939400	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
10	chr11:46938000-46939400	Flanking Active TSS	NHEK	skin
11	chr11:46938000-46939600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:46938000-46939600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:46938000-46939600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr11:46938000-46939600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:46938000-46939600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
16	chr11:46938000-46939600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
17	chr11:46938000-46939600	Flanking Active TSS	Placenta	Placenta
18	chr11:46938000-46939600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr11:46938000-46939600	Flanking Active TSS	Osteobl	bone
20	chr11:46938000-46939800	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
21	chr11:46938000-46940400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:46938000-46940600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:46938000-46940600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:46938000-46940600	Active TSS	Ovary	ovary
25	chr11:46938000-46940600	Flanking Bivalent TSS/Enh	Thymus	Thymus
26	chr11:46938000-46940800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:46938000-46940800	Active TSS	H9 Cell Line	embryonic stem cell
28	chr11:46938000-46941200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:46938200-46939400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
30	chr11:46938200-46939400	Flanking Active TSS	Liver	Liver
31	chr11:46938200-46939600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr11:46938200-46939600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
33	chr11:46938200-46939600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr11:46938200-46939600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
35	chr11:46938200-46939600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
36	chr11:46938200-46939600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
37	chr11:46938200-46939800	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
38	chr11:46938200-46939800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
39	chr11:46938200-46939800	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:46938200-46939800	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
41	chr11:46938200-46939800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
42	chr11:46938200-46940400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
43	chr11:46938200-46940400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:46938200-46940400	Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr11:46938200-46940400	Active TSS	Brain Substantia Nigra	brain
46	chr11:46938200-46940400	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr11:46938200-46940400	Active TSS	Fetal Lung	lung
48	chr11:46938200-46940400	Active TSS	A549	lung
49	chr11:46938200-46940400	Active TSS	NHDF-Ad	bronchial
50	chr11:46938200-46940600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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