Variant report

Variant	rs1897924
Chromosome Location	chr2:50223434-50223435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10495990	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[YRI][hapmap]
rs11896576	0.81[CEU][hapmap]
rs11896677	0.81[CEU][hapmap];0.81[CHD][hapmap]
rs11897428	0.81[CEU][hapmap]
rs12615426	0.87[ASW][hapmap];0.87[CEU][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.88[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1363025	0.81[CEU][hapmap];0.81[CHD][hapmap]
rs1363026	0.81[CEU][hapmap]
rs1363027	0.81[CEU][hapmap]
rs1363031	0.81[CEU][hapmap]
rs1363032	0.81[CEU][hapmap]
rs1421568	0.81[CEU][hapmap]
rs1421585	0.81[CHD][hapmap]
rs1592722	0.81[CEU][hapmap]
rs1592723	0.81[CEU][hapmap]
rs1592725	0.81[CEU][hapmap]
rs1592726	0.81[CEU][hapmap]
rs1592727	0.81[CEU][hapmap]
rs17439468	1.00[ASW][hapmap];0.92[CEU][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17440201	0.81[CEU][hapmap]
rs17492942	0.81[CEU][hapmap]
rs17493005	0.81[CEU][hapmap]
rs17493081	0.81[CEU][hapmap]
rs1836545	0.81[CEU][hapmap]
rs4508640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56792051	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58619206	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59887674	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6545138	0.81[CEU][hapmap];0.81[CHD][hapmap]
rs6722600	0.81[CEU][hapmap]
rs6733024	0.81[CEU][hapmap]
rs6741686	0.81[CEU][hapmap]
rs6747457	0.81[CEU][hapmap]
rs6754304	0.81[CEU][hapmap]
rs7421423	0.81[CEU][hapmap]
rs7563247	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7563354	0.82[JPT][hapmap]
rs7569404	0.81[CEU][hapmap]
rs7569617	0.81[CEU][hapmap]
rs7604126	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9941503	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv932839	chr2:50181785-50225697	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv874031	chr2:50202953-50243386	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50223400-50233000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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