Variant report

Variant	rs189805587
Chromosome Location	chr15:83658369-83658370
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:83658219-83658391	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr15:83658332-83658488	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83656238..83660142-chr15:83661647..83663488,3	K562	blood:
2	chr15:83657996..83660029-chr15:83677727..83680589,2	MCF-7	breast:
3	chr15:83620995..83623285-chr15:83658339..83660401,2	MCF-7	breast:
4	chr15:83517627..83519742-chr15:83658208..83659783,2	K562	blood:
5	chr15:83653421..83657652-chr15:83658187..83664048,8	MCF-7	breast:
6	chr15:83658098..83660468-chr15:83666992..83669244,2	MCF-7	breast:

No data

Variant related genes	Relation type
HOMER2	TF binding region
ENSG00000169609	Chromatin interaction
ENSG00000169612	Chromatin interaction
ENSG00000103942	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv18735	chr15:83657697-83659355	Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3377570	chr15:83657835-83658720	Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83655400-83675400	Weak transcription	Spleen	Spleen
2	chr15:83655600-83659200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:83655800-83659200	Weak transcription	Aorta	Aorta
4	chr15:83655800-83668200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:83655800-83668200	Weak transcription	Brain Angular Gyrus	brain
6	chr15:83655800-83673600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:83655800-83675600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:83655800-83679200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:83656000-83659600	Weak transcription	HUVEC	blood vessel
10	chr15:83656000-83668600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:83656000-83669000	Weak transcription	Left Ventricle	heart
12	chr15:83656000-83669000	Weak transcription	Right Atrium	heart
13	chr15:83656000-83675200	Weak transcription	Esophagus	oesophagus
14	chr15:83656200-83660600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr15:83656200-83661000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:83656200-83664000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:83656200-83668600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:83656200-83668600	Weak transcription	Brain Hippocampus Middle	brain
19	chr15:83656200-83668600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:83656200-83668800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:83656200-83669000	Weak transcription	Colonic Mucosa	Colon
22	chr15:83656200-83669000	Weak transcription	HMEC	breast
23	chr15:83656200-83669000	Weak transcription	HSMMtube	muscle
24	chr15:83656200-83669000	Weak transcription	NHLF	lung
25	chr15:83656200-83673400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:83656200-83677800	Weak transcription	Fetal Brain Male	brain
27	chr15:83656200-83679000	Weak transcription	Right Ventricle	heart
28	chr15:83656400-83658400	Strong transcription	Fetal Stomach	stomach
29	chr15:83656400-83659400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr15:83656400-83659400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:83656400-83659400	Weak transcription	Fetal Lung	lung
32	chr15:83656400-83660800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:83656400-83661200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:83656400-83668200	Weak transcription	Colon Smooth Muscle	Colon
35	chr15:83656400-83668600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:83656400-83668600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:83656400-83668600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr15:83656400-83668800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:83656400-83669000	Weak transcription	Fetal Kidney	kidney
40	chr15:83656400-83679200	Weak transcription	Fetal Heart	heart
41	chr15:83656600-83659000	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr15:83656600-83659400	Weak transcription	Hela-S3	cervix
43	chr15:83656600-83661200	Weak transcription	Pancreas	Pancrea
44	chr15:83656600-83668400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr15:83656600-83668600	Weak transcription	Brain Substantia Nigra	brain
46	chr15:83656600-83668800	Weak transcription	GM12878-XiMat	blood
47	chr15:83656600-83669000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr15:83656600-83669000	Weak transcription	Thymus	Thymus
49	chr15:83656600-83674400	Weak transcription	HepG2	liver
50	chr15:83656800-83658800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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