Variant report

Variant	rs1898197
Chromosome Location	chr10:52110500-52110501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52109231..52111670-chr10:52122633..52124290,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11005290	0.84[EUR][1000 genomes]
rs1344848	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1436212	0.81[EUR][1000 genomes]
rs17785945	0.81[EUR][1000 genomes]
rs1898196	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7911266	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518071	chr10:51595893-52157935	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1053903	chr10:51886486-52163991	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1040661	chr10:51886486-52164585	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1051028	chr10:51886486-52164585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1037118	chr10:51886486-52167442	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	esv2830205	chr10:51978430-52135215	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv1046850	chr10:52009869-52135542	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv540625	chr10:52009869-52135542	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv521273	chr10:52051645-52197847	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52095200-52119000	Weak transcription	Fetal Kidney	kidney
2	chr10:52095400-52118200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:52096400-52123000	Weak transcription	Small Intestine	intestine
4	chr10:52103000-52122400	Weak transcription	HUVEC	blood vessel
5	chr10:52103600-52118200	Weak transcription	Hela-S3	cervix
6	chr10:52104000-52115000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:52104000-52115000	Weak transcription	Lung	lung
8	chr10:52104000-52116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:52104000-52118200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:52104000-52123200	Weak transcription	Aorta	Aorta
11	chr10:52104000-52134000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:52104000-52141400	Weak transcription	Pancreas	Pancrea
13	chr10:52104200-52110800	Weak transcription	Liver	Liver
14	chr10:52104200-52111600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:52104200-52117600	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:52104200-52133600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr10:52104200-52134200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr10:52104200-52157000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:52108000-52112000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:52108000-52118200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:52108000-52118200	Weak transcription	Adipose Nuclei	Adipose
22	chr10:52108000-52118200	Weak transcription	Left Ventricle	heart
23	chr10:52108000-52120400	Weak transcription	Ovary	ovary
24	chr10:52108000-52125400	Weak transcription	Right Ventricle	heart
25	chr10:52108600-52112200	ZNF genes & repeats	GM12878-XiMat	blood
26	chr10:52109000-52112600	ZNF genes & repeats	K562	blood
27	chr10:52109200-52113400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:52109400-52115000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:52109400-52134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:52109600-52111200	Weak transcription	Primary T cells from cord blood	blood
31	chr10:52109600-52115000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:52109600-52117600	Weak transcription	Fetal Lung	lung
33	chr10:52109600-52118000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:52109800-52113600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr10:52109800-52120000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr10:52110200-52110800	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr10:52110200-52118200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:52110400-52120600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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