Variant report

Variant	rs1898465
Chromosome Location	chr8:85097778-85097779
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1866088	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1898466	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs56145895	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv611646	chr8:85048690-85112377	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85094000-85098600	Active TSS	Brain Anterior Caudate	brain
2	chr8:85094200-85097800	Bivalent/Poised TSS	Fetal Kidney	kidney
3	chr8:85094200-85098000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
4	chr8:85094400-85098200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr8:85094600-85098200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
6	chr8:85094600-85098600	Active TSS	Right Atrium	heart
7	chr8:85094800-85098200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:85095400-85098200	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr8:85096600-85097800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
10	chr8:85096600-85098200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
11	chr8:85097000-85099000	Bivalent/Poised TSS	Fetal Brain Male	brain
12	chr8:85097200-85097800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
13	chr8:85097400-85097800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
14	chr8:85097600-85097800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
15	chr8:85097600-85097800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
16	chr8:85097600-85099400	Active TSS	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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