Variant report

Variant	rs189871339
Chromosome Location	chr8:114384875-114384876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:114384631-114384878	SK-N-SH_RA	brain:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
2	SMC3	chr8:114384613-114384918	Hela-S3	cervix:	n/a	chr8:114384756-114384770
3	CTCF	chr8:114384641-114384875	GM12878	blood:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
4	CTCF	chr8:114384629-114384893	HUVEC	blood vessel:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
5	CTCF	chr8:114384509-114385034	MCF-7	breast:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
6	RAD21	chr8:114384562-114384944	ECC-1	luminal epithelium:	n/a	chr8:114384755-114384774
7	CTCF	chr8:114384645-114384879	Hela-S3	cervix:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
8	CTCF	chr8:114384645-114384884	MCF-7	breast:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
9	CTCF	chr8:114384552-114384937	GM12878	blood:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
10	RAD21	chr8:114384631-114384929	SK-N-SH_RA	brain:	n/a	chr8:114384755-114384774
11	SMC3	chr8:114384549-114384881	SK-N-SH	brain:	n/a	chr8:114384756-114384770
12	ZNF143	chr8:114384619-114384911	GM12878	blood:	n/a	n/a
13	CTCF	chr8:114384533-114384986	SK-N-SH	brain:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
14	SMC3	chr8:114384586-114384915	GM12878	blood:	n/a	chr8:114384756-114384770
15	RAD21	chr8:114384592-114384942	Hela-S3	cervix:	n/a	chr8:114384755-114384774
16	CTCF	chr8:114384521-114384934	MCF-7	breast:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
17	RAD21	chr8:114384477-114385019	MCF-7	breast:	n/a	chr8:114384755-114384774
18	RAD21	chr8:114384644-114384905	SK-N-SH_RA	brain:	n/a	chr8:114384755-114384774
19	RAD21	chr8:114384478-114384986	SK-N-SH	brain:	n/a	chr8:114384755-114384774
20	RAD21	chr8:114384605-114384926	H1-hESC	embryonic stem cell:	n/a	chr8:114384755-114384774
21	RAD21	chr8:114384589-114384972	H1-hESC	embryonic stem cell:	n/a	chr8:114384755-114384774

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:114384438..114385053-chr8:114992865..114993457,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227514	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2754463	chr8:114353649-114501547	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1019362	chr8:114377031-114419106	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1031488	chr8:114382671-114419106	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links