Variant report

Variant	rs189879057
Chromosome Location	chr1:169659294-169659295
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169658516..169660936-chr1:169662078..169664299,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv872539	chr1:169658586-169674590	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169647800-169659600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr1:169647800-169660000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:169652800-169660200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr1:169653200-169671600	Weak transcription	Spleen	Spleen
5	chr1:169656200-169659400	Enhancers	Primary B cells from cord blood	blood
6	chr1:169656200-169659400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr1:169656600-169659600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:169656800-169662600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr1:169657000-169659400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:169657000-169660200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:169657000-169661800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr1:169657600-169659400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr1:169657800-169659600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:169657800-169659800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr1:169657800-169660200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:169657800-169660600	Enhancers	Fetal Thymus	thymus
17	chr1:169658200-169659400	Enhancers	Dnd41	blood
18	chr1:169658200-169660600	Enhancers	GM12878-XiMat	blood
19	chr1:169658400-169660200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr1:169658400-169666200	Enhancers	Thymus	Thymus
21	chr1:169658600-169659600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
22	chr1:169658600-169661000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
23	chr1:169658800-169660000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr1:169658800-169660400	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr1:169659000-169659400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
26	chr1:169659000-169660200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:169659000-169661600	Genic enhancers	Primary B cells from peripheral blood	blood
28	chr1:169659200-169659400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr1:169659200-169659600	Enhancers	Primary T cells from cord blood	blood
30	chr1:169659200-169659800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:169659200-169660400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
32	chr1:169659200-169660600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:169659200-169660800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
34	chr1:169659200-169661000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
35	chr1:169659200-169661000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
36	chr1:169659200-169661200	Genic enhancers	Primary T cells fromperipheralblood	blood
37	chr1:169659200-169661400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links