Variant report

Variant	rs1898907
Chromosome Location	chr2:188892476-188892477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10198982	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12693485	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12993345	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13017119	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13028498	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13411420	1.00[ASN][1000 genomes]
rs13414541	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13422157	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1439561	0.83[EUR][1000 genomes]
rs16829566	0.83[ASN][1000 genomes]
rs16829582	0.83[ASN][1000 genomes]
rs17263610	1.00[ASN][1000 genomes]
rs1837411	0.94[EUR][1000 genomes]
rs1837412	0.86[EUR][1000 genomes]
rs2165150	0.94[EUR][1000 genomes]
rs34631252	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35688051	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666749	0.91[EUR][1000 genomes]
rs6434252	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6434253	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901676	0.83[ASN][1000 genomes]
rs7582356	0.94[EUR][1000 genomes]
rs7595688	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533353	chr2:188498301-189024655	Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875597	chr2:188573244-188916290	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1011832	chr2:188631943-188896492	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv536087	chr2:188631943-188896492	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv584041	chr2:188644642-188928433	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv523293	chr2:188774681-188928433	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv470503	chr2:188837548-188896397	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv584043	chr2:188837548-188896397	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv875600	chr2:188857787-188893936	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv875601	chr2:188871436-188934777	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188884800-188897200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:188885200-188893200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:188885200-188897000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:188891200-188893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:188892000-188893200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:188892000-188894200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:188892200-188893400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:188892400-188892600	Active TSS	Aorta	Aorta
9	chr2:188892400-188896400	Enhancers	HUES64 Cell Line	embryonic stem cell

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