Variant report

Variant	rs189896000
Chromosome Location	chr13:30832512-30832513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv899962	chr13:30831422-30863235	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30799600-30845200	Weak transcription	HMEC	breast
2	chr13:30805600-30841800	Weak transcription	Ovary	ovary
3	chr13:30805600-30853200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr13:30810600-30849200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr13:30813000-30849000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:30822400-30833600	Weak transcription	K562	blood
7	chr13:30822800-30834000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr13:30823600-30849200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:30823600-30849200	Weak transcription	HSMM	muscle
10	chr13:30823800-30833800	Weak transcription	NHEK	skin
11	chr13:30823800-30849200	Weak transcription	Fetal Brain Female	brain
12	chr13:30824000-30833400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr13:30824000-30845200	Weak transcription	Thymus	Thymus
14	chr13:30824000-30848800	Weak transcription	Fetal Muscle Leg	muscle
15	chr13:30824200-30849200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr13:30824400-30849200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:30824600-30833400	Weak transcription	Pancreas	Pancrea
18	chr13:30824800-30832800	Strong transcription	Dnd41	blood
19	chr13:30826800-30860400	Weak transcription	Esophagus	oesophagus
20	chr13:30827400-30833600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr13:30828200-30833400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr13:30828200-30837000	Weak transcription	HUVEC	blood vessel
23	chr13:30828200-30849000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr13:30828400-30848800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr13:30828600-30857600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr13:30829600-30845200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr13:30829600-30845200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr13:30829600-30848800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr13:30829800-30847400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr13:30829800-30850000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr13:30830400-30832600	Enhancers	Fetal Heart	heart
32	chr13:30830800-30832600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr13:30831000-30832600	Enhancers	Brain Cingulate Gyrus	brain
34	chr13:30831000-30832600	Enhancers	Colon Smooth Muscle	Colon
35	chr13:30831000-30833600	Weak transcription	Fetal Intestine Small	intestine
36	chr13:30831400-30832600	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr13:30831600-30832600	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr13:30831800-30832600	Enhancers	Brain Germinal Matrix	brain
39	chr13:30831800-30833200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr13:30832000-30832600	Enhancers	HepG2	liver
41	chr13:30832000-30833200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr13:30832000-30833600	Weak transcription	Left Ventricle	heart
43	chr13:30832000-30845200	Weak transcription	Primary B cells from cord blood	blood
44	chr13:30832000-30849000	Weak transcription	Fetal Lung	lung
45	chr13:30832200-30832600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr13:30832200-30832800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr13:30832200-30833000	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr13:30832200-30833200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr13:30832200-30833200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr13:30832200-30833200	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links