Variant report

Variant	rs1899048
Chromosome Location	chr8:65258742-65258743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10087386	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10093773	0.83[ASN][1000 genomes]
rs10097471	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10098936	0.81[ASN][1000 genomes]
rs10099728	0.81[ASN][1000 genomes]
rs10099867	0.83[ASN][1000 genomes]
rs10104164	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12334830	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12335124	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12708021	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13252463	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13254698	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13262851	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13274668	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13275299	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1440135	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16931063	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17223648	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17315206	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2008156	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2009633	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28631026	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs298210	1.00[MKK][hapmap]
rs62521215	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62521216	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67633283	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs971236	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	esv2761224	chr8:65235506-65259631	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1830069	chr8:65235506-65263721	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1031877	chr8:65240464-65291136	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1809961	chr8:65242166-65268559	Weak transcription Strong transcription Enhancers Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1809415	chr8:65242166-65272478	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv6230	chr8:65242569-65273236	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv1825065	chr8:65244654-65311200	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65249600-65260000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:65257800-65260200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:65258400-65263600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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