Variant report

Variant	rs189916580
Chromosome Location	chr15:57028344-57028345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:57028330-57028503	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ZNF280D	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3387219	chr15:57027535-57031262	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57026000-57028600	Weak transcription	HUVEC	blood vessel
2	chr15:57026000-57029400	Weak transcription	NH-A	brain
3	chr15:57026200-57028400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:57026200-57028600	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:57026200-57029000	Weak transcription	Small Intestine	intestine
6	chr15:57026200-57029200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:57026200-57029200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:57026200-57029200	Weak transcription	Ovary	ovary
9	chr15:57026200-57029600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:57026200-57032400	Weak transcription	Pancreas	Pancrea
11	chr15:57026400-57029000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:57026400-57029200	Enhancers	K562	blood
13	chr15:57026400-57029400	Weak transcription	Fetal Kidney	kidney
14	chr15:57026800-57029000	Weak transcription	Fetal Thymus	thymus
15	chr15:57026800-57030000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:57027000-57028600	Weak transcription	Hela-S3	cervix
17	chr15:57027600-57028800	Enhancers	Placenta	Placenta
18	chr15:57027600-57033000	Enhancers	HepG2	liver
19	chr15:57027800-57030200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:57027800-57032600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr15:57028200-57028800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:57028200-57029000	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr15:57028200-57029800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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