Variant report

Variant	rs189923039
Chromosome Location	chr17:37993206-37993207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:37993153-37993672	GM12892	blood:	n/a	n/a
2	POLR2A	chr17:37993138-37993513	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
KRT8P34	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv1795575	chr17:37974075-38041762	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv978421	chr17:37991919-37997485	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37982600-37993800	Strong transcription	Primary B cells from cord blood	blood
2	chr17:37984400-37993400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr17:37985000-37994800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:37985000-37996200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr17:37985600-37997800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr17:37985800-37994800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr17:37986600-37994400	Weak transcription	Primary T cells from cord blood	blood
8	chr17:37986600-37994400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr17:37988600-37994400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr17:37991400-37994200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr17:37992200-37993400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr17:37992600-37993600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr17:37992600-37993600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr17:37992600-37994800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:37992600-37994800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr17:37992600-37995000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr17:37992600-37998600	Weak transcription	Thymus	Thymus
18	chr17:37992800-37994000	Weak transcription	GM12878-XiMat	blood
19	chr17:37992800-37995200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr17:37993200-37993400	Enhancers	Primary B cells from peripheral blood	blood

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