Variant report

Variant	rs189928383
Chromosome Location	chr3:155755358-155755359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv521239	chr3:155755327-155762725	Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155754200-155758200	Enhancers	Brain Hippocampus Middle	brain
2	chr3:155754400-155755400	Enhancers	Brain Cingulate Gyrus	brain
3	chr3:155754400-155755600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:155754400-155755600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:155754400-155755600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:155754600-155755600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:155754800-155758000	Weak transcription	Brain Angular Gyrus	brain
8	chr3:155754800-155758000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:155755000-155755600	Active TSS	Brain Anterior Caudate	brain
10	chr3:155755200-155756800	Weak transcription	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links