Variant report

Variant	rs189961446
Chromosome Location	chr7:66576520-66576521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv831019	chr7:66516808-66720485	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv966838	chr7:66548076-66617503	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
6	esv1802655	chr7:66576034-66634666	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	esv1816643	chr7:66576034-66634666	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
8	esv1840497	chr7:66576034-66634666	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
9	esv1851064	chr7:66576034-66634666	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66487000-66576600	Weak transcription	Gastric	stomach
2	chr7:66495200-66597200	Weak transcription	Right Ventricle	heart
3	chr7:66508800-66590400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:66526400-66585600	Weak transcription	Brain Angular Gyrus	brain
5	chr7:66532400-66587600	Weak transcription	Fetal Kidney	kidney
6	chr7:66532600-66582800	Weak transcription	HSMMtube	muscle
7	chr7:66533800-66623200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr7:66535600-66593600	Weak transcription	Hela-S3	cervix
9	chr7:66538400-66593600	Weak transcription	Fetal Thymus	thymus
10	chr7:66538400-66594200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:66538400-66595800	Weak transcription	Brain Substantia Nigra	brain
12	chr7:66540400-66582800	Weak transcription	Placenta	Placenta
13	chr7:66540800-66594000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:66543400-66600000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:66544600-66592600	Weak transcription	HepG2	liver
16	chr7:66545600-66616600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr7:66547000-66577400	Weak transcription	A549	lung
18	chr7:66547000-66594200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:66547600-66594000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:66547600-66594000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:66547800-66593400	Weak transcription	Pancreas	Pancrea
22	chr7:66547800-66602800	Weak transcription	Fetal Muscle Leg	muscle
23	chr7:66549800-66585000	Weak transcription	Esophagus	oesophagus
24	chr7:66550000-66582800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr7:66550000-66586200	Weak transcription	Left Ventricle	heart
26	chr7:66550000-66587800	Weak transcription	Brain Hippocampus Middle	brain
27	chr7:66550000-66593400	Weak transcription	Spleen	Spleen
28	chr7:66550000-66624000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr7:66550200-66583600	Weak transcription	Adipose Nuclei	Adipose
30	chr7:66550200-66584000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr7:66550200-66593200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr7:66554600-66595000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:66555800-66587400	Weak transcription	Primary B cells from cord blood	blood
34	chr7:66560400-66593600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr7:66560800-66589200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr7:66561600-66579000	Weak transcription	Colon Smooth Muscle	Colon
37	chr7:66562800-66593600	Weak transcription	NHEK	skin
38	chr7:66563000-66585600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr7:66564400-66576600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr7:66564800-66582000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr7:66564800-66582800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:66564800-66594400	Weak transcription	NH-A	brain
43	chr7:66565200-66589800	Weak transcription	Aorta	Aorta
44	chr7:66566200-66583000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr7:66566400-66585400	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr7:66566400-66585400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr7:66566400-66587400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr7:66566400-66587600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr7:66566400-66593400	Weak transcription	Duodenum Mucosa	Duodenum
50	chr7:66566400-66605600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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