Variant report

Variant	rs189971725
Chromosome Location	chr9:72763451-72763452
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv3483551	chr9:72760232-72765130	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3483553	chr9:72761434-72764184	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3483554	chr9:72761767-72764058	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv824947	chr9:72762006-72764750	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv16659	chr9:72762238-72763468	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72725800-72764200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:72726800-72785200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:72727000-72776200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:72731200-72768400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:72740600-72766400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:72741400-72765600	Weak transcription	Esophagus	oesophagus
7	chr9:72741600-72775400	Weak transcription	Adipose Nuclei	Adipose
8	chr9:72741600-72789400	Weak transcription	Spleen	Spleen
9	chr9:72750400-72771600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:72751000-72771800	Weak transcription	Aorta	Aorta
11	chr9:72752000-72779600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:72752400-72775200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:72752600-72771400	Weak transcription	NH-A	brain
14	chr9:72753800-72770000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:72754800-72764200	Strong transcription	Stomach Smooth Muscle	stomach
16	chr9:72755400-72765800	Weak transcription	Left Ventricle	heart
17	chr9:72758800-72772200	Weak transcription	Colonic Mucosa	Colon
18	chr9:72759000-72763800	Strong transcription	Colon Smooth Muscle	Colon
19	chr9:72759200-72774400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr9:72759600-72800000	Weak transcription	Right Ventricle	heart
21	chr9:72759800-72774000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr9:72759800-72792200	Weak transcription	HMEC	breast
23	chr9:72760000-72768600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:72760000-72785200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:72760400-72765400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:72761000-72767400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:72761200-72768400	Weak transcription	HSMM	muscle
28	chr9:72761600-72766000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr9:72762400-72764600	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:72762400-72767400	Strong transcription	HSMMtube	muscle
31	chr9:72762800-72770000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:72763000-72763600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:72763000-72766200	Weak transcription	Ovary	ovary
34	chr9:72763200-72769800	Weak transcription	Psoas Muscle	Psoas
35	chr9:72763400-72766400	Weak transcription	Fetal Stomach	stomach
36	chr9:72763400-72770800	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links