Variant report

Variant	rs1899826
Chromosome Location	chr12:41082105-41082106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10748141	0.94[AFR][1000 genomes]
rs1348510	0.88[AFR][1000 genomes]
rs1348512	1.00[AFR][1000 genomes]
rs1444207	1.00[AFR][1000 genomes]
rs1584092	0.94[AFR][1000 genomes]
rs1584099	0.94[AFR][1000 genomes]
rs1596515	0.88[AFR][1000 genomes]
rs1596530	0.94[AFR][1000 genomes]
rs1596532	1.00[AFR][1000 genomes]
rs4767989	1.00[AFR][1000 genomes]
rs6581919	0.94[AFR][1000 genomes]
rs6581936	1.00[AFR][1000 genomes]
rs7487223	0.94[AFR][1000 genomes]
rs7956665	0.83[AFR][1000 genomes]
rs935225	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv832378	chr12:40943111-41132305	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832379	chr12:41054440-41232749	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41081000-41085800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:41082000-41082200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:41082000-41082200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:41082000-41082200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:41082000-41082400	Enhancers	Ovary	ovary
6	chr12:41082000-41082600	Enhancers	Brain Anterior Caudate	brain
7	chr12:41082000-41082600	Flanking Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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