Variant report

Variant	rs189986646
Chromosome Location	chr10:50240314-50240315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50239471..50243603-chr10:50247127..50250365,5	K562	blood:
2	chr10:50235643..50238061-chr10:50238727..50242186,3	K562	blood:
3	chr10:50238868..50241425-chr10:50375110..50377223,2	K562	blood:
4	chr10:50229481..50231907-chr10:50238016..50240371,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv3341340	chr10:50239946-50244344	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50223000-50254200	Weak transcription	NHDF-Ad	bronchial
3	chr10:50224400-50258200	Weak transcription	Brain Anterior Caudate	brain
4	chr10:50224600-50244800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:50227800-50243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:50232200-50241800	Weak transcription	Fetal Kidney	kidney
7	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:50232600-50245000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:50232800-50242000	Weak transcription	Brain Substantia Nigra	brain
10	chr10:50232800-50247800	Weak transcription	Right Atrium	heart
11	chr10:50232800-50255400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:50233000-50266000	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:50233400-50241600	Weak transcription	Fetal Lung	lung
14	chr10:50233800-50247000	Weak transcription	Right Ventricle	heart
15	chr10:50233800-50261400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:50233800-50261400	Weak transcription	Spleen	Spleen
17	chr10:50234000-50249000	Strong transcription	Fetal Muscle Leg	muscle
18	chr10:50234000-50254200	Weak transcription	Left Ventricle	heart
19	chr10:50234200-50246800	Weak transcription	Fetal Intestine Small	intestine
20	chr10:50234800-50240800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr10:50235200-50243000	Weak transcription	Lung	lung
22	chr10:50236200-50240800	Strong transcription	Ovary	ovary
23	chr10:50236600-50240600	Strong transcription	Adipose Nuclei	Adipose
24	chr10:50237400-50240800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:50237400-50240800	Strong transcription	Fetal Stomach	stomach
26	chr10:50237400-50244200	Strong transcription	Stomach Smooth Muscle	stomach
27	chr10:50237600-50240600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr10:50237600-50248800	Weak transcription	Liver	Liver
29	chr10:50238200-50240600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:50238600-50241600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:50238800-50241600	Weak transcription	Aorta	Aorta
32	chr10:50239800-50240600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:50240200-50240600	Strong transcription	HSMMtube	muscle

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