Variant report

Variant	rs189991919
Chromosome Location	chrX:55476930-55476931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chrX:55476769-55476976	LNCaP	prostate:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
2	CTCF	chrX:55476820-55476970	SAEC	small airway:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
3	CTCF	chrX:55476849-55476960	A549	lung:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
4	CTCF	chrX:55476820-55476970	HUVEC	blood vessel:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
5	CTCF	chrX:55476860-55477010	HMF	breast:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
6	CTCF	chrX:55476820-55476970	HEK293	kidney:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
7	CTCF	chrX:55476780-55476930	NHDF-neo	bronchial:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
8	CTCF	chrX:55476820-55476970	GM12873	blood:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
9	CTCF	chrX:55476843-55476932	Fibrobl	skin:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
10	RAD21	chrX:55476715-55477124	SK-N-SH	brain:	n/a	chrX:55476870-55476889
11	CTCF	chrX:55476702-55477039	IMR90	lung:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
12	RAD21	chrX:55476789-55476978	ECC-1	luminal epithelium:	n/a	chrX:55476870-55476889
13	CTCF	chrX:55476800-55476950	MCF-7	breast:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
14	RAD21	chrX:55476764-55476956	H1-hESC	embryonic stem cell:	n/a	chrX:55476870-55476889
15	RAD21	chrX:55476678-55477068	H1-hESC	embryonic stem cell:	n/a	chrX:55476870-55476889
16	CTCF	chrX:55476800-55476950	Hela-S3	cervix:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
17	CTCF	chrX:55476800-55476950	AG10803	skin:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
18	RAD21	chrX:55476664-55477150	MCF-7	breast:	n/a	chrX:55476870-55476889
19	RAD21	chrX:55476716-55477042	A549	lung:	n/a	chrX:55476870-55476889
20	RAD21	chrX:55476677-55477071	A549	lung:	n/a	chrX:55476870-55476889
21	RAD21	chrX:55476709-55477088	Hela-S3	cervix:	n/a	chrX:55476870-55476889
22	RAD21	chrX:55476745-55477032	HepG2	liver:	n/a	chrX:55476870-55476889
23	RAD21	chrX:55476850-55476933	A549	lung:	n/a	chrX:55476870-55476889
24	RAD21	chrX:55476697-55476998	HCT-116	colon:	n/a	chrX:55476870-55476889
25	CTCF	chrX:55476847-55476958	MCF-7	breast:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
26	RAD21	chrX:55476686-55477052	HCT-116	colon:	n/a	chrX:55476870-55476889
27	RAD21	chrX:55476708-55477039	H1-hESC	embryonic stem cell:	n/a	chrX:55476870-55476889
28	CTCF	chrX:55476840-55476990	Caco-2	colon:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
29	CTCF	chrX:55476852-55476956	MCF-7	breast:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
30	CTCF	chrX:55476692-55476984	K562	blood:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
31	SMC3	chrX:55476793-55476961	GM12878	blood:	n/a	chrX:55476871-55476885
32	CTCF	chrX:55476780-55476930	HPF	lung:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
33	CTCF	chrX:55476800-55476950	HRPEpiC	eye:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
34	CTCF	chrX:55476920-55477070	RPTEC	kidney:	n/a	n/a
35	CTCF	chrX:55476800-55476950	GM12873	blood:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
36	RAD21	chrX:55476721-55477120	MCF-7	breast:	n/a	chrX:55476870-55476889
37	CTCF	chrX:55476820-55476970	NHDF-neo	bronchial:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
38	RAD21	chrX:55476745-55476965	HepG2	liver:	n/a	chrX:55476870-55476889
39	CTCF	chrX:55476775-55476975	K562	blood:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
40	CTCF	chrX:55476799-55477050	H1-hESC	embryonic stem cell:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
41	CTCF	chrX:55476718-55476966	HepG2	liver:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
42	RAD21	chrX:55476785-55476959	SK-N-SH_RA	brain:	n/a	chrX:55476870-55476889
43	CTCF	chrX:55476840-55476990	HFF	foreskin:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
44	RAD21	chrX:55476754-55476986	GM12878	blood:	n/a	chrX:55476870-55476889
45	CTCF	chrX:55476791-55476968	Hela-S3	cervix:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
46	CTCF	chrX:55476780-55476930	A549	lung:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
47	SMC3	chrX:55476765-55477009	K562	blood:	n/a	chrX:55476871-55476885
48	CTCF	chrX:55476820-55476970	BJ	skin:	n/a	chrX:55476869-55476887 chrX:55476871-55476892
49	RAD21	chrX:55476784-55477037	SK-N-SH_RA	brain:	n/a	chrX:55476870-55476889
50	CTCF	chrX:55476840-55476990	HPAF	blood vessel:	n/a	chrX:55476869-55476887 chrX:55476871-55476892

Variant related genes	Relation type
MAGEH1	TF binding region
ENSG00000266328	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410436	chrX:55229677-55671986	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv3494957	chrX:55328700-55585199	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3494958	chrX:55328757-55585154	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv469510	chrX:55463837-55570914	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv482619	chrX:55463837-55570914	Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55476800-55477800	Enhancers	Fetal Muscle Leg	muscle
2	chrX:55476800-55478000	Enhancers	Liver	Liver

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